CK934779

Overview
NameCK934779
Unique NameCK934779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.099e-19
Identity = 44/115 (38.26%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  313 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            W+  I G   + ++GG F LT+ F  +YP KPPK +F    +HPNV  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  Q++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQ--WSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.354e-19
Identity = 50/147 (34.01%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            R+ +E     ++ P    A P   D    L  W+  I G + + + GG F L+++F  DYP KPPK  F    +HPN+  SG +CL IL +   W PA+T+ ++L+ I  LL   NP DP   +  Q++  D A+Y+   ++  K+Y
Sbjct:    6 RIAKELSDLGRDPPASCSAGPVGDD----LYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKY 146          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.354e-19
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            +L  W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  PNP DP   +    +  D  +Y R  R+  ++Y
Sbjct:   29 DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.354e-19
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  313 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.354e-19
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  313 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.354e-19
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  313 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.354e-19
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  313 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.354e-19
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  313 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.992e-19
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            R+  E     K+ P    A P   D    L  W+  I G   + + GG F L+++F  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  LL  PNP DP   +   ++  D + Y+   R+  ++Y
Sbjct:    5 RINRELADLGKDPPSSCSAGPVGDD----LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.992e-19
Identity = 53/153 (34.64%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 642
            RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L F  DYP  PPK +F    FHPN+YP G VC+SIL+               W P  +V++IL+ +  +L +PN    A  D  +++  D  ++ +  +Q
Sbjct:    8 RLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          
The following BLAST results are available for this feature:
BLAST of CK934779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
U2D2B_MOUSE4.099e-1938.26Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC5_YEAST5.354e-1934.01Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UB2D4_HUMAN5.354e-1937.82Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D2_XENLA5.354e-1937.39Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT5.354e-1937.39Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE5.354e-1937.39Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN5.354e-1937.39Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN5.354e-1937.39Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC4_SCHPO6.992e-1933.33Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UB2G2_PONAB6.992e-1934.64Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934779 ID=CK934779; Name=CK934779; organism=Citrus sinensis; type=EST; length=866bp
GGGGATAGAAGCATGGAAGTTGCGTAAGCTTCAATCTTCCGTTTAAGAAT
ATCAGAAGTCAACATCCCGGGCAGCAAGCACGTACACGGTACTCGGTACT
CGGTACTCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGT
TAGTTATACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTG
GTGGTATGCTCGCGGCCGTCTTACAGAGGAGCGAAAAGCCTGGCGCAAGA
ATCATCCCCACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTG
AATTTGATGATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTG
GGAAGGTGGCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCA
GCAAACCCCCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTC
TACCCTTCTGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTG
GAGACCTGCCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGC
TGGATCAACCCAATCCTGCTGATCCTGCACAAACTGATGGATACCAGCTT
TTCATCCAGGATCCTGCCGAGTACAAGAGAAGGGTGCGACAGCAGGCCAA
GCAATATCCACCTGTTCTATAATGCAAGCTTGCTTAAATGGATATGAGTA
ACTCATTTGTTACCTCACATGGTTTATGTCTATCATTATTTACTACAGTA
AACTCAGTTACAAGTGCACCAACTTTGGTGTTGAACATGGTTATAATATG
CTACCTGTATCATTTGTGAAGGGTGCTTTTATTGGCTGTCTTGTTTTCTT
CTTGTTCTGTTGACCG
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