CK934779

Overview
NameCK934779
Unique NameCK934779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.193e-18
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  313 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.558e-18
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            +L  W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D   Y +  R+  ++Y
Sbjct:   29 DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.034e-18
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            R+ +E     ++ P    A P  +D    L  W+  I G + + + GG F L ++F  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  +L  PNP DP   +   ++    A+Y+   R+  ++Y
Sbjct:    5 RINKELTDLGRDPPSSCSAGPVGED----LFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.034e-18
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            R+ +E     ++ P    A P  +D    L  W+  I G   + + GG F L ++F  DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  +L  PNP +P   +   ++  D A Y+   R+  ++Y
Sbjct:    5 RINKELTDLGRDPPSSCSAGPVGED----LFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.034e-18
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  208 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            A  R++ E +  +++ P    A P  ++   ++  W+  I G   + + GG F +++ FS DYP KPPK  F    +HPN+   G++CL IL E   W PA T  ++L+ I  LL  PNP DP   +   L+  D ++Y+   ++  ++Y
Sbjct:    2 ASKRISRELRDMQRHPPANCSAGPVAEE---DIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQ--WSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKY 146          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            N+  W   I G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   89 NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRY 205          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            N+  W   I G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   89 NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRY 205          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            N+  W   I G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   89 NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRY 205          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            N+  W   I G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   83 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 199          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            N+  W   I G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   83 NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 199          
The following BLAST results are available for this feature:
BLAST of CK934779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
UB2D2_PIG1.193e-1837.39Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC2_CAEEL1.558e-1836.13Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC1_MAGGR2.034e-1831.97Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC1_COLGL2.034e-1831.97Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC12_ARATH2.034e-1832.00Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UB2E3_MOUSE4.532e-1839.50Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN4.532e-1839.50Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN4.532e-1839.50Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2E2_MOUSE4.532e-1839.50Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN4.532e-1839.50Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934779 ID=CK934779; Name=CK934779; organism=Citrus sinensis; type=EST; length=866bp
GGGGATAGAAGCATGGAAGTTGCGTAAGCTTCAATCTTCCGTTTAAGAAT
ATCAGAAGTCAACATCCCGGGCAGCAAGCACGTACACGGTACTCGGTACT
CGGTACTCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGT
TAGTTATACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTG
GTGGTATGCTCGCGGCCGTCTTACAGAGGAGCGAAAAGCCTGGCGCAAGA
ATCATCCCCACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTG
AATTTGATGATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTG
GGAAGGTGGCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCA
GCAAACCCCCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTC
TACCCTTCTGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTG
GAGACCTGCCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGC
TGGATCAACCCAATCCTGCTGATCCTGCACAAACTGATGGATACCAGCTT
TTCATCCAGGATCCTGCCGAGTACAAGAGAAGGGTGCGACAGCAGGCCAA
GCAATATCCACCTGTTCTATAATGCAAGCTTGCTTAAATGGATATGAGTA
ACTCATTTGTTACCTCACATGGTTTATGTCTATCATTATTTACTACAGTA
AACTCAGTTACAAGTGCACCAACTTTGGTGTTGAACATGGTTATAATATG
CTACCTGTATCATTTGTGAAGGGTGCTTTTATTGGCTGTCTTGTTTTCTT
CTTGTTCTGTTGACCG
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