CK934779

Overview
NameCK934779
Unique NameCK934779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            R+ +E     ++ P    A P   D    L  W+  I G   + + GG F L+++F  DYP KPPK  F    +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL   NP DP   +   ++  D  +Y+   R+  K+Y
Sbjct:    6 RIAKELSDLERDPPTSCSAGPVGDD----LYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKY 146          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 49/147 (33.33%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            R+ +E +   ++ P G VA P T+D   NL  ++  + G   + +EGG F L L+  ++YP  PP  +F    +HPNV   G +CLS L +D  W PA+ ++ +L+ IQ L+  PNP DP   D  +++ ++  +     R+  K+Y
Sbjct:    6 RIIKEIETLTRDPPPGIVAAP-TED---NLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKD--WSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKY 146          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 654
            RL  E  +   ++  G  A P   D   NL+ W   I G + T +EG  F +++ F  +YP  PP   F    +HPNV  SG +CL IL +   W     V+ IL+ +Q LL +PN A P      +L+ +DP EYKR + Q+ K+
Sbjct:   32 RLRSELMSLMMSNTPGISAFP---DSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDK--WSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYKE 172          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 42/115 (36.52%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  313 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            W+  I G   + ++GG F LT++F  DYP KPPK  F    +HPN+  + ++CL IL     W PA+T+ ++L+ I  LL  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.722e-17
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG------WRPAITVKQILVGIQDLLDQPNPADPAQTD---GYQLFI--QDPAEYKRRVRQQAKQ 654
            N+  W+ I+ G   T +EGG F   + F  +YP  PPK  F    +HPN+YP G +C+SIL+ DN       W PA  +  IL+ +  LL++PNP  PA  D    Y+ ++  +D   Y   V++  K+
Sbjct:   29 NITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKK 157          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  313 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 642
            WE ++ G   T +EGG+F   L F  DYP KPPK KF    +HPN+   G VC+SIL++           +  W P  TV+ IL+ +  +L  PN   PA  D  ++  ++ AE+K++V Q
Sbjct:   36 WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQ 156          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 47/147 (31.97%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  217 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            R+ +E     ++ P    A P   D    L  W+  I G   + + GG F L+++F  DYP KPPK       +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL   NP DP   +   ++ QD  +Y+   ++  K+Y
Sbjct:    5 RINKELSDLGRDPPSSCSAGPVGDD----LYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQ--WSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKY 145          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            N   +  I+ G   + +EGG F L L+  EDYP   PK +F    +HPN+   G +CL +L +   W PA+ ++ IL+ IQ LL  PNP DP   D  +L+  + AE  R  R+  ++Y
Sbjct:   31 NARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDK--WSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKY 147          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            NL  W   I G  G+ +EGG F L ++FS +YP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++Q+  E+ R  R   K+Y
Sbjct:  114 NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIARLWTKRY 230          
BLAST of CK934779 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 45/119 (37.82%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  301 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 657
            N+  W   I G  G+ +EGG F L + F+ +YP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct:   75 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 191          
The following BLAST results are available for this feature:
BLAST of CK934779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
UBC4_YEAST7.731e-1832.65Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC13_SCHPO7.731e-1833.33Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC11_SCHPO7.731e-1835.62Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UB2D3_BOVIN7.731e-1836.52Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC_ASFB71.722e-1735.66Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC7_CAEEL2.249e-1737.19Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC4_CANAL2.249e-1731.97Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBE2N_DROME2.938e-1736.97Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBCD2_DROME2.938e-1738.66Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UB2E1_MOUSE2.938e-1737.82Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934779 ID=CK934779; Name=CK934779; organism=Citrus sinensis; type=EST; length=866bp
GGGGATAGAAGCATGGAAGTTGCGTAAGCTTCAATCTTCCGTTTAAGAAT
ATCAGAAGTCAACATCCCGGGCAGCAAGCACGTACACGGTACTCGGTACT
CGGTACTCATAAGCTTGTTTCTTCTGCAAACAAACATTGATTAATACAGT
TAGTTATACAAGCGATCATAATTCAAACGTAAGAGTCATCATGTCGGGTG
GTGGTATGCTCGCGGCCGTCTTACAGAGGAGCGAAAAGCCTGGCGCAAGA
ATCATCCCCACGGTTTTGTGGCCAAGCCTGAAACCAAAGATGGTTCCGTG
AATTTGATGATCTGGGAGTGTATCATTCCTGGCAAGACTGGGACTGATTG
GGAAGGTGGCTACTTTCCTCTTACTCTCTACTTCAGCGAAGACTATCCCA
GCAAACCCCCAAAGTGTAAGTTTCCTCAAGGTTTCTTTCATCCTAATGTC
TACCCTTCTGGAACAGTATGCCTGTCAATCCTCAATGAGGACAATGGGTG
GAGACCTGCCATTACTGTGAAGCAAATTTTAGTGGGCATTCAGGATTTGC
TGGATCAACCCAATCCTGCTGATCCTGCACAAACTGATGGATACCAGCTT
TTCATCCAGGATCCTGCCGAGTACAAGAGAAGGGTGCGACAGCAGGCCAA
GCAATATCCACCTGTTCTATAATGCAAGCTTGCTTAAATGGATATGAGTA
ACTCATTTGTTACCTCACATGGTTTATGTCTATCATTATTTACTACAGTA
AACTCAGTTACAAGTGCACCAACTTTGGTGTTGAACATGGTTATAATATG
CTACCTGTATCATTTGTGAAGGGTGCTTTTATTGGCTGTCTTGTTTTCTT
CTTGTTCTGTTGACCG
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