CK934825

Overview
NameCK934825
Unique NameCK934825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934825 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.872e-26
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 3
Query:  441 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 755
            K ++  +FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QLSWNYNY+             N+PD++  DP++SFK+++WFW+
Sbjct:   97 KREIAAYFAHVTHETGH-------------LCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          

HSP 2 Score: 64.6994 bits (156), Expect = 1.872e-26
Identity = 39/99 (39.39%), Postives = 51/99 (51.52%), Query Frame = 2
Query:  170 GWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 463
            G+CG + DYC  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+F
Sbjct:   16 GYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYF 104          
BLAST of CK934825 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.121e-26
Identity = 48/146 (32.88%), Postives = 71/146 (48.63%), Query Frame = 3
Query:  441 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPSKPSCHEVIIDEWKPSANDVNA-----GRLPG 848
            K ++  FFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q+SWN+NY               +PD +A DP +SFK+A+WFWM       + H+V+   +  +   +N      G+ PG
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQGFGATIRAINGALECNGKNPG 259          

HSP 2 Score: 56.9954 bits (136), Expect = 4.121e-26
Identity = 34/103 (33.01%), Postives = 50/103 (48.54%), Query Frame = 2
Query:  170 GWCGLTTDYCCEGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 463
            G+CG T  YC +GCQS  C     +   G      G AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFF
Sbjct:   42 GYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFF 142          
BLAST of CK934825 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.183e-25
Identity = 46/113 (40.71%), Postives = 54/113 (47.79%), Query Frame = 3
Query:  441 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYCDPN----YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMT 758
            K ++  FFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QLSWNYNY               NP+ +ATD   SFK+A+WFWMT
Sbjct:  136 KREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          

HSP 2 Score: 60.077 bits (144), Expect = 1.183e-25
Identity = 39/110 (35.45%), Postives = 51/110 (46.36%), Query Frame = 2
Query:  164 SIGWCGLTTDYCCEGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 463
            + G+CG  T YC  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFF
Sbjct:   40 NFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFF 143          
BLAST of CK934825 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.540e-25
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  441 KEKLLPFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 755
            K ++  FFA   HET               +C+  E+  +++ YCD +   +PC    KYYGRGP+Q+SWNYNY               +P+ +A D V++FK+A+WFWM
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNA-YCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          

HSP 2 Score: 65.855 bits (159), Expect = 1.540e-25
Identity = 37/99 (37.37%), Postives = 48/99 (48.48%), Query Frame = 2
Query:  170 GWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 463
            G+CG T  YC +GCQS  C     G      G  G GG     +    F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFF
Sbjct:   40 GYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          
BLAST of CK934825 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.458e-22
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 3
Query:  531 YCFNREVGAASSDYCDPN----YPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 755
            +C+  E+  AS DYCD      YPC     Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W+WM
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          

HSP 2 Score: 53.5286 bits (127), Expect = 2.458e-22
Identity = 33/98 (33.67%), Postives = 46/98 (46.94%), Query Frame = 2
Query:  170 GWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFF 463
            G+CG   DYC  GCQ    Q  C    P      +      I++      +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA F
Sbjct:   38 GYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          
BLAST of CK934825 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.037e-19
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  170 GWCGLTTDYCCEGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 403
            GWCG T DYC +GCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   44 GWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          

HSP 2 Score: 27.7202 bits (60), Expect = 3.037e-19
Identity = 12/22 (54.55%), Postives = 13/22 (59.09%), Query Frame = 3
Query:  108 GSAGNCG---SGVVCPGGECCS 164
            GSA  CG      +CPGG CCS
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCS 41          
The following BLAST results are available for this feature:
BLAST of CK934825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_DIOJA1.872e-2633.94Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_ORYSJ4.121e-2632.88Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU1.183e-2540.71Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIA_MAIZE1.540e-2535.45Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU2.458e-2241.98Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIC_POPTR3.037e-1955.56Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934825 ID=CK934825; Name=CK934825; organism=Citrus sinensis; type=EST; length=870bp
GGGGATACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAA
ATGAGGCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGT
ACTAGGAGGCTCAGCAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAG
GGGAGTGTTGTAGTCGATTGGTTGGTGTGGCCTAACAACAGACTACTGTT
GTGAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGAT
CCCGACGACGGGACGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTC
AAGGAAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCC
CTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCT
TTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAAT
TGCTGCCTTTTTTTGCCCAAACTGGCCACGAAACTACTGGGGGATGGCCC
GATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGT
TGGCGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGA
AGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTA
CGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGA
CCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCT
GGATGACTGCACAGCCATCAAAGCCATCGTGCCACGAAGTCATTATCGAC
GAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATA
CGGTCTAACNNNNAATATAA
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