CK934830

Overview
NameCK934830
Unique NameCK934830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_YERE8 (Probable ubiquinone biosynthesis protein ubiB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.835e-16
Identity = 48/120 (40.00%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +LR  L  LGP +IK GQ+++ R D+      ++L +LQD V  F   +A   IE  +G PLE  F     + +A+AS+ QV+ A L+E G++V +KV RP I PII  D+ L   LA +
Sbjct:   56 RLRLALQELGPVWIKFGQMMSTRRDLFPPAIADQLALLQDRVAPFDGALARKHIEIAMGGPLETWFDDFEQEALASASIAQVHTARLKENGQEVVLKVIRPDILPIIKADVRLMYRLAGW 175          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XANAC (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas axonopodis pv. citri GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.835e-16
Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATL----RETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            R  +LR  L  LGP F+K GQ+L+ R D++  D   EL +LQD V  F  Q A  I+E  LG P+   F+   +  +A+AS+ QV+ ATL         +V +KV RP IE  I  D+ L  +LA+
Sbjct:   51 RGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVEAALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLAT 176          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_VIBSL (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio splendidus (strain LGP32) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.835e-16
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  493 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +DKE+      +LR  L  LGP +IK GQ+++ R D+      ++L +LQD V  F  Q+A   +E+ LG  L+  F+    + +A+AS+ QV+ A L+E+G ++ +KV RP I P+I  DL L   +A
Sbjct:   49 QDKEL----GHRLRLALQELGPVWIKFGQMMSTRRDLFPPHIADQLALLQDQVAPFDGQLAKRDMEKALGGRLDNWFTDFDIEPLASASIAQVHTAKLKESGREIVLKVIRPDIRPVIDADLKLMHRMA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XANCP (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas campestris pv. campestris GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.284e-15
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETG----EDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            R  +LR  L  LGP F+K GQ+L+ R D++  D   EL +LQD V  F  + A  I+E  LG P+   F+   +  +A+AS+ QV+ ATL         +V +KV RP IE  I  D+ L  +LA+
Sbjct:   51 RGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSLAT 176          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XANCB (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas campestris pv. campestris (strain B100) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.284e-15
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETG----EDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            R  +LR  L  LGP F+K GQ+L+ R D++  D   EL +LQD V  F  + A  I+E  LG P+   F+   +  +A+AS+ QV+ ATL         +V +KV RP IE  I  D+ L  +LA+
Sbjct:   51 RGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSLAT 176          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XANC8 (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas campestris pv. campestris (strain 8004) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.284e-15
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETG----EDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            R  +LR  L  LGP F+K GQ+L+ R D++  D   EL +LQD V  F  + A  I+E  LG P+   F+   +  +A+AS+ QV+ ATL         +V +KV RP IE  I  D+ L  +LA+
Sbjct:   51 RGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSLAT 176          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_VIBC3 (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.284e-15
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +LR  L  LGP +IK GQ+++ R D+      + L +LQD V  F    A  +IEEELG PLE  F     + +A+AS+ QV+ A L+  G DV +KV RP I P I  D+ L   +A
Sbjct:   56 RLRLALQELGPVWIKFGQMMSTRRDLFPPYIADPLAMLQDKVAPFDGLQAKQLIEEELGAPLETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHISS (Probable ubiquinone biosynthesis protein ubiB OS=Shigella sonnei (strain Ss046) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHIFL (Probable ubiquinone biosynthesis protein ubiB OS=Shigella flexneri GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHIF8 (Probable ubiquinone biosynthesis protein ubiB OS=Shigella flexneri serotype 5b (strain 8401) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
The following BLAST results are available for this feature:
BLAST of CK934830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_YERE89.835e-1640.00Probable ubiquinone biosynthesis protein ubiB OS=Y... [more]
UBIB_XANAC9.835e-1639.68Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_VIBSL9.835e-1637.21Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_XANCP1.284e-1538.89Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANCB1.284e-1538.89Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANC81.284e-1538.89Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_VIBC31.284e-1541.53Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_SHISS1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIFL1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIF81.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934830 ID=CK934830; Name=CK934830; organism=Citrus sinensis; type=EST; length=885bp
GGGGGACCTGGCCCTTGGTACTTTCGTTTCTCACCAAAATCACTCGCTCG
CTCCGTCTTATCAACCATGGATTTGATTAATCCGAATTGCATAAACTCAC
TCGTTTTCTCTACAAACAAGCATCGCCAAACGAACAAGTGCAGAAATGTA
TTTTCCACCTCCAAGGAATCTTCGTTTCGGTTATCAACGGCGCCACAGAG
AAGCGAGAGATTCTCAACTTCAATCTCGGCGAGTGATGCTTCAGTTAACG
GTGTAACGACGACGCCAGCGGATAAGAGATCGTTGGAATTAGTGAAATCC
AGTAAAGCGATGGAGCAATTAGACATCGAACGCGGCGTTTGCGTGCCGTT
TCGCAAGTACACGCCTGAAACAGTGAGGAACAAGGTATTGGAATCTAGAG
GGGCTGTAATTTCTCTAATGTCACGTGGAGTGGAGATAGTATGGAGTTTG
GGATTGTATTGGTCTAATTTGACGTATGATTGTTTGGTTGGAAGAGACAA
AGAGGTTGTTCCTGATCGTGCTCGCCAACTTCGGAATCTCTTGTGTAATT
TGGGGCCTTCCTTTATCAAAGCTGGGCAGGTGCTTGCGAACAGGCCTGAT
ATTGTAAGAGAAGATTATATGAATGAACTCTGCATTCTTCAAGATGATGT
CCCCTCTTTTCCAAATCAGGTTGCTTTTAACATTATAGAAGAGGAATTGG
GTCGACCTCTGGAAGCTGTCTTCAGCAAAATTTCTTCACAGACAATAGCG
GCTGCAAGTCTGGGTCAAGTTTACCGAGCCACCCTGCGTGAAACAGGGGA
GGACGTTGCTATTAAGGTGCAAAGGCCTGGGATAGAGCCCATAATCTACC
GAGATCTTTTTCTTTTCAGAACTCTTGCTTCATTC
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