CK934830

Overview
NameCK934830
Unique NameCK934830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHIDS (Probable ubiquinone biosynthesis protein ubiB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHIBS (Probable ubiquinone biosynthesis protein ubiB OS=Shigella boydii serotype 4 (strain Sb227) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHIB3 (Probable ubiquinone biosynthesis protein ubiB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_PASMU (Probable ubiquinone biosynthesis protein ubiB OS=Pasteurella multocida GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRE---------TGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +LR  L  LGP +IK GQ+L+ R D+   D  +EL +LQD V  F  ++A   IE+ LG PLE  F + +   +A+AS+ QV+ A  ++          G++V +KV RP I+ +I  DL L   +AS+
Sbjct:   56 RLRLALQELGPVWIKLGQMLSTRRDLFPPDIADELALLQDQVDPFDGKIARAQIEKALGAPLETWFDEFNETALASASIAQVHTAKFKQNAPHLENRLAGKEVVLKVLRPNIQQMINADLSLMYKVASW 184          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_ECOSE (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain SE11) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_ECOLI (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain K12) GN=ubiB PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_ECOLC (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_ECOHS (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli O9:H4 (strain HS) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_ECODH (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain K12 / DH10B) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_ECOBW (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia coli (strain K12 / BW2952) GN=ubiB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.678e-15
Identity = 56/149 (37.58%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IE  +G  P+EA F     + +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLA 174          
The following BLAST results are available for this feature:
BLAST of CK934830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_SHIDS1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIBS1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHIB31.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_PASMU1.678e-1537.98Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_ECOSE1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOLI1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOLC1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOHS1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECODH1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_ECOBW1.678e-1537.58Probable ubiquinone biosynthesis protein ubiB OS=E... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934830 ID=CK934830; Name=CK934830; organism=Citrus sinensis; type=EST; length=885bp
GGGGGACCTGGCCCTTGGTACTTTCGTTTCTCACCAAAATCACTCGCTCG
CTCCGTCTTATCAACCATGGATTTGATTAATCCGAATTGCATAAACTCAC
TCGTTTTCTCTACAAACAAGCATCGCCAAACGAACAAGTGCAGAAATGTA
TTTTCCACCTCCAAGGAATCTTCGTTTCGGTTATCAACGGCGCCACAGAG
AAGCGAGAGATTCTCAACTTCAATCTCGGCGAGTGATGCTTCAGTTAACG
GTGTAACGACGACGCCAGCGGATAAGAGATCGTTGGAATTAGTGAAATCC
AGTAAAGCGATGGAGCAATTAGACATCGAACGCGGCGTTTGCGTGCCGTT
TCGCAAGTACACGCCTGAAACAGTGAGGAACAAGGTATTGGAATCTAGAG
GGGCTGTAATTTCTCTAATGTCACGTGGAGTGGAGATAGTATGGAGTTTG
GGATTGTATTGGTCTAATTTGACGTATGATTGTTTGGTTGGAAGAGACAA
AGAGGTTGTTCCTGATCGTGCTCGCCAACTTCGGAATCTCTTGTGTAATT
TGGGGCCTTCCTTTATCAAAGCTGGGCAGGTGCTTGCGAACAGGCCTGAT
ATTGTAAGAGAAGATTATATGAATGAACTCTGCATTCTTCAAGATGATGT
CCCCTCTTTTCCAAATCAGGTTGCTTTTAACATTATAGAAGAGGAATTGG
GTCGACCTCTGGAAGCTGTCTTCAGCAAAATTTCTTCACAGACAATAGCG
GCTGCAAGTCTGGGTCAAGTTTACCGAGCCACCCTGCGTGAAACAGGGGA
GGACGTTGCTATTAAGGTGCAAAGGCCTGGGATAGAGCCCATAATCTACC
GAGATCTTTTTCTTTTCAGAACTCTTGCTTCATTC
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