CK934830

Overview
NameCK934830
Unique NameCK934830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_AERS4 (Probable ubiquinone biosynthesis protein ubiB OS=Aeromonas salmonicida (strain A449) GN=ubiB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.774e-21
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  499 KEVVPDRARQLRNLLC--NLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            K+  PD +R  R  L    LGP FIK GQ+L+ R D++  D   EL +LQD VP F  Q A   IEE LG P+E +F       +A+AS+ QV+   L+E G ++ IKV RP IEP+I  DL L +TLA
Sbjct:   45 KKKQPDLSRGARIRLAFEALGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEESLGCPVETLFDDFDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: Y889_SYNY3 (Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC 6803) GN=slr0889 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 63/164 (38.41%), Postives = 95/164 (57.93%), Query Frame = 1
Query:  391 ESRGAVIS-LMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            + RG +I  L+S G    W    Y + L     VG  +   P+    L  +L  LGP +IK GQ+L+ RPD++   Y+N L  LQ +VP  P     ++++ E  +PL   F +I S+ IAA S+GQ++RA L ++GE VAIKV+RPGI+ I+ +D  L + +A
Sbjct:    9 DRRGEIIKVLLSNG----WD---YMNGLLTLGKVGEPQIPTPE---VLTKILVELGPFYIKLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFPQPLGETFQEIESEPIAAGSIGQIHRAVL-QSGETVAIKVKRPGIDVIVEQDSLLIKDVA 161          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_PSEPG (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas putida (strain GB-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDL 858
            R  +LR  L +LGP FIK GQ+L+ R D++  D  +EL +LQD VP F  Q A  +IEE+LG  +  VFS+   + +A+AS+ QV+ A L+ TGE+V +KV RPG++P+I +DL
Sbjct:   56 RGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKVVRPGLKPVIAQDL 168          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_AZOVD (Probable ubiquinone biosynthesis protein ubiB OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.326e-20
Identity = 57/124 (45.97%), Postives = 84/124 (67.74%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRD---LFLFRTLA 879
            RA +LR  L +LGP FIK GQ+L+ R D++ ED  +EL  LQD VP F  Q +  +IEE+LG  ++  F++  S+ +A+AS+ QV+ A L+ TGE+V +KV RPG++ +I +D   L+LF  LA
Sbjct:   56 RAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLAWLYLFARLA 178          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_NEIMB (Probable ubiquinone biosynthesis protein ubiB OS=Neisseria meningitidis serogroup B GN=ubiB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  520 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFR 870
            A +LR  L +LGP FIK GQVL+ RPD++  DY  EL  LQD VP F  +++   IE+ LG+ +E ++++  ++ IA+AS+ QV++A L  +GE VA+KV RP + P+I +DL L R
Sbjct:   51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQSIEKLYAEFETEPIASASIAQVHKARL-HSGEQVAVKVLRPNLLPVIEQDLSLMR 166          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_DIAST (Probable ubiquinone biosynthesis protein ubiB OS=Diaphorobacter sp. (strain TPSY) GN=ubiB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.262e-20
Identity = 64/175 (36.57%), Postives = 92/175 (52.57%), Query Frame = 1
Query:  409 ISLMSRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRET---GEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +S  +RG+ IVW +  Y             W       +    K   P R ++LR  L +LGP F+K GQVL+ R D++  D  +EL +LQD VP F   VA   IE    RP+  VF     Q +A+AS+ QV+ A +R+      +VA+KV RPG+ P+I +DL L R +A +
Sbjct:    1 MSRFARGITIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAP-RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGW 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_BURP8 (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.262e-20
Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLR---ETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +LR  L +LGP F+K GQVL+ R D++R D   EL  LQD VP F + VA  IIE+ LG P++ +F       +A+AS+ QV+ ATL+     G+ VA+KV RP + P+I  DL L R +A
Sbjct:   51 RLRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAPVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIA 171          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_ACISJ (Probable ubiquinone biosynthesis protein ubiB OS=Acidovorax sp. (strain JS42) GN=ubiB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.262e-20
Identity = 64/175 (36.57%), Postives = 92/175 (52.57%), Query Frame = 1
Query:  409 ISLMSRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRET---GEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +S  +RG+ IVW +  Y             W       +    K   P R ++LR  L +LGP F+K GQVL+ R D++  D  +EL +LQD VP F   VA   IE    RP+  VF     Q +A+AS+ QV+ A +R+      +VA+KV RPG+ P+I +DL L R +A +
Sbjct:    1 MSRFARGITIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAP-RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGW 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_PSEE4 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas entomophila (strain L48) GN=ubiB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.954e-20
Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = 1
Query:  499 KEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDL 858
            K +   R  +LR  L +LGP FIK GQ+L+ R D++  D  +EL +LQD VP F  Q A  +IEE+LG  +  VFS+   + +A+AS+ QV+ A L+ +GE+V +KV RPG++P+I +DL
Sbjct:   50 KPLALSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-SGEEVVVKVVRPGLKPVIAQDL 168          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_PSEP1 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.858e-20
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDL 858
            R  +LR  L +LGP FIK GQ+L+ R D++  D  +EL +LQD VP F  + A  +IEE+LG  +  VFS+   + +A+AS+ QV+ A L+ TGE+V +KV RPG++P+I +DL
Sbjct:   56 RGARLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKVVRPGLKPVIAQDL 168          
The following BLAST results are available for this feature:
BLAST of CK934830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_AERS47.774e-2145.74Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
Y889_SYNY31.326e-2038.41Uncharacterized protein slr0889 OS=Synechocystis s... [more]
UBIB_PSEPG1.326e-2047.37Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_AZOVD1.326e-2045.97Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_NEIMB1.732e-2046.15Probable ubiquinone biosynthesis protein ubiB OS=N... [more]
UBIB_DIAST2.262e-2036.57Probable ubiquinone biosynthesis protein ubiB OS=D... [more]
UBIB_BURP82.262e-2045.45Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_ACISJ2.262e-2036.57Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_PSEE42.954e-2045.00Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_PSEP13.858e-2046.49Probable ubiquinone biosynthesis protein ubiB OS=P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004226_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934830 ID=CK934830; Name=CK934830; organism=Citrus sinensis; type=EST; length=885bp
GGGGGACCTGGCCCTTGGTACTTTCGTTTCTCACCAAAATCACTCGCTCG
CTCCGTCTTATCAACCATGGATTTGATTAATCCGAATTGCATAAACTCAC
TCGTTTTCTCTACAAACAAGCATCGCCAAACGAACAAGTGCAGAAATGTA
TTTTCCACCTCCAAGGAATCTTCGTTTCGGTTATCAACGGCGCCACAGAG
AAGCGAGAGATTCTCAACTTCAATCTCGGCGAGTGATGCTTCAGTTAACG
GTGTAACGACGACGCCAGCGGATAAGAGATCGTTGGAATTAGTGAAATCC
AGTAAAGCGATGGAGCAATTAGACATCGAACGCGGCGTTTGCGTGCCGTT
TCGCAAGTACACGCCTGAAACAGTGAGGAACAAGGTATTGGAATCTAGAG
GGGCTGTAATTTCTCTAATGTCACGTGGAGTGGAGATAGTATGGAGTTTG
GGATTGTATTGGTCTAATTTGACGTATGATTGTTTGGTTGGAAGAGACAA
AGAGGTTGTTCCTGATCGTGCTCGCCAACTTCGGAATCTCTTGTGTAATT
TGGGGCCTTCCTTTATCAAAGCTGGGCAGGTGCTTGCGAACAGGCCTGAT
ATTGTAAGAGAAGATTATATGAATGAACTCTGCATTCTTCAAGATGATGT
CCCCTCTTTTCCAAATCAGGTTGCTTTTAACATTATAGAAGAGGAATTGG
GTCGACCTCTGGAAGCTGTCTTCAGCAAAATTTCTTCACAGACAATAGCG
GCTGCAAGTCTGGGTCAAGTTTACCGAGCCACCCTGCGTGAAACAGGGGA
GGACGTTGCTATTAAGGTGCAAAGGCCTGGGATAGAGCCCATAATCTACC
GAGATCTTTTTCTTTTCAGAACTCTTGCTTCATTC
back to top