CK934898 | Citrus Genome Database

Overview


Name	CK934898
Unique Name	CK934898
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	787

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_PIG (60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.779e-26
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 27.335 bits (59), Expect = 5.779e-26
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_MOUSE (60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.779e-26
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 27.335 bits (59), Expect = 5.779e-26
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_MACFA (60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.779e-26
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 27.335 bits (59), Expect = 5.779e-26
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_HUMAN (60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.779e-26
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 27.335 bits (59), Expect = 5.779e-26
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_CHICK (60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.779e-26
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 27.335 bits (59), Expect = 5.779e-26
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_CERNI (60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.779e-26
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 27.335 bits (59), Expect = 5.779e-26
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_BOVIN (60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.779e-26
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 27.335 bits (59), Expect = 5.779e-26
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27_CANFA (60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.275e-25
Identity = 57/112 (50.89%), Postives = 73/112 (65.18%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY+ D+ L K VV  D  +    K  A +E K + EE++KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136

HSP 2 Score: 27.335 bits (59), Expect = 1.275e-25
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27B_YEAST (60S ribosomal protein L27-B OS=Saccharomyces cerevisiae GN=RPL27B PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.315e-24
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK  D+ ++  P GH LVAGI++ P KV  K  AKK AK +++K F+K+V+Y HL+PTRYT DV+  K VV+ ++ +   ++  A K  KK  EER +  KN+WFF+KLRF
Sbjct:   25 IVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136

HSP 2 Score: 22.7126 bits (47), Expect = 2.315e-24
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F K  K  +++ GRYAG+
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGK 21

BLAST of CK934898 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.643e-24
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 3

Query:   84 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTHDVD-LKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 416
            IVK  D+ ++  P GH LVAGI++ P KV  K  AKK AK +++K F+K+V+Y HL+PTRYT DV+  K VV+ ++ +   ++  A K  KK  EER +  KN+WFF+KLRF
Sbjct:   25 IVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136

HSP 2 Score: 22.7126 bits (47), Expect = 6.643e-24
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 1

Query:   22 MVTFPKPNKTVILL*GRYAGR 84
            M  F K  K  +++ GRYAG+
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGK 21

The following BLAST results are available for this feature:

BLAST of CK934898 vs. ExPASy Swiss-Prot

BLAST of CK934898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
RL27_PIG	5.779e-26	51.79	60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 P...	[more]
RL27_MOUSE	5.779e-26	51.79	60S ribosomal protein L27 OS=Mus musculus GN=Rpl27...	[more]
RL27_MACFA	5.779e-26	51.79	60S ribosomal protein L27 OS=Macaca fascicularis G...	[more]
RL27_HUMAN	5.779e-26	51.79	60S ribosomal protein L27 OS=Homo sapiens GN=RPL27...	[more]
RL27_CHICK	5.779e-26	51.79	60S ribosomal protein L27 OS=Gallus gallus GN=RPL2...	[more]
RL27_CERNI	5.779e-26	51.79	60S ribosomal protein L27 OS=Cervus nippon GN=RPL2...	[more]
RL27_BOVIN	5.779e-26	51.79	60S ribosomal protein L27 OS=Bos taurus GN=RPL27 P...	[more]
RL27_CANFA	1.275e-25	50.89	60S ribosomal protein L27 OS=Canis familiaris GN=R...	[more]
RL27B_YEAST	2.315e-24	48.21	60S ribosomal protein L27-B OS=Saccharomyces cerev...	[more]
RL27A_YEAST	6.643e-24	48.21	60S ribosomal protein L27-A OS=Saccharomyces cerev...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004225_E02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_E02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934898 ID=CK934898; Name=CK934898; organism=Citrus sinensis; type=EST; length=787bp
GGGGGAGGAGTGAGAGTTGAAATGGTGACGTTTCCGAAACCAAATAAGAC
CGTGATCCTTCTTTAGGGCCGTTACGCCGGCCGATTGTGAAGTCGTTCGA
CGACAGGACCCGCGAGAGGCCGAACGGGCACTGTCTGGTAGCGGGGATAA
AGAAGTAACCGGGCAAAGTGATCCACAAGGACTCGGCGAAGAAGACAGCG
AAGTAGTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAGCTACCAGCACCT
GATGCCCACGCGCTACACTCACGACGTCGATTTGAAGGTAGTCGTGACGG
CTGATTCCCTCCAGAGCAAGGACAAGAAGATGATAGCTTGCAAGGAGACC
AAGAAACGCCTCGAGGAGAGGTTTAAGACTAGCAAGAATCGTTGGTTCTT
TACTAAGCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTTGTC
GTTTTGTTTTGTTTTGTGTTATTGAAAACGCTTTAGTTGTTAAAGTGCGA
ATTTTGAGATTTATGTAGTGTTTTGTGAACTTATTTTTTTTCTGGATCTG
GTACTATTTTTATGTGAAAAAAAAATCACGCTGCCGACAAAAAAATTGGT
TCTCTGTTGCACTGCTTGTGGTCAACAGATTGCTACTCTTCGTCTTCATC
TTCGTCTTTACTCTTCGATCTGCTACTGCTACTACTTGAACAATATGCTC
AAGTTCAGCCAGCCTTTACTTCATCGTTTTCTTATATTATATTCTTTTGA
TTTGATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA