CK934925

Overview
NameCK934925
Unique NameCK934925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.513e-12
Identity = 55/131 (41.98%), Postives = 70/131 (53.44%), Query Frame = 3 
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAM 221
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.513e-12
Identity = 54/131 (41.22%), Postives = 72/131 (54.96%), Query Frame = 3 
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LDP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM
Sbjct:   95 RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAM 221
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 55/131 (41.98%), Postives = 70/131 (53.44%), Query Frame = 3 
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAM 221
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 55/131 (41.98%), Postives = 70/131 (53.44%), Query Frame = 3 
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAM 223
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 55/131 (41.98%), Postives = 70/131 (53.44%), Query Frame = 3 
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAM 222
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 55/131 (41.98%), Postives = 70/131 (53.44%), Query Frame = 3 
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAM 223
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 55/133 (41.35%), Postives = 73/133 (54.89%), Query Frame = 3 
Query:  180 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAM 221
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 3 
Query:  180 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAM 219
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 3 
Query:  180 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAM 219
[Close]
BLAST of CK934925 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 55/131 (41.98%), Postives = 70/131 (53.44%), Query Frame = 3 
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAM 527
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAM 222
The following BLAST results are available for this feature:
BLAST of CK934925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB22_TOBAC1.513e-1241.98Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_GOSHI1.513e-1241.22Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2B_SOLLC1.976e-1241.98Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL1.976e-1241.98Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_NICPL1.976e-1241.98Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC1.976e-1241.98Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_SOLLC1.976e-1241.35Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_ORYSJ1.976e-1240.60Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.976e-1240.60Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_TOBAC1.976e-1241.98Chlorophyll a-b binding protein 16, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_B08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934925 ID=CK934925; Name=CK934925; organism=Citrus sinensis; type=EST; length=534bp
ACTACGGGTTCGACCCGTTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAG
TATGACTATGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGA
TATTATTGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCGCTTC
AGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTC
ATTCATGGACGTTGGGCCATGTTGGCTACTCTCGGTGCCCTCACTGTTGA
GTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTG
AAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTG
ATATGGATTGAGGTTTTGGTAATTGGCTACATTGAGTTCCAAAGAAACTC
AGAGCTTGACCCGGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATC
CTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCA
GAGATCAAGCACGCCCGCCTTGCCATGGTTGCAT
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