CK935006

Overview
NameCK935006
Unique NameCK935006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_CYCTA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cycas taitungensis GN=ndhD PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.114e-25
Identity = 59/87 (67.82%), Postives = 70/87 (80.46%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            FFLAGTSYD IR  +LD +GG+AIP+ KI T+FS  SMASLALPGMSGFVAE +V  GIITS+K+ L  +IVI  +MA GMILTPI+
Sbjct:  346 FFLAGTSYDGIRTLFLDGIGGMAIPMSKISTMFSSFSMASLALPGMSGFVAESMVLLGIITSRKYSLTFQIVIAAIMAIGMILTPIH 432          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_PSINU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Psilotum nudum GN=ndhD PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.018e-25
Identity = 51/87 (58.62%), Postives = 70/87 (80.46%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            FFLAG SYDR +  YLD++GG+A+P+P++FT+FS  S+ASLALPGMS FVAE ++F GI+T+  + L+ K +I F+ A G+ILTPIY
Sbjct:  346 FFLAGISYDRTQTLYLDQLGGIAVPMPRLFTMFSFFSLASLALPGMSSFVAEFLIFLGIVTNPYYSLIFKSIILFIGAIGVILTPIY 432          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_ADICA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Adiantum capillus-veneris GN=ndhD PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.948e-23
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            FFLAGT YDR R   LD++GG AI +PK+FT+FS LS+ASLALPGMSGFV+EL+VF G++TS ++    K  IT +   G +LTPIY
Sbjct:  347 FFLAGTCYDRTRTYLLDQLGGAAISMPKLFTMFSTLSLASLALPGMSGFVSELLVFLGVVTSNQYSFAFKAGITVLEGIGTVLTPIY 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_MARPO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Marchantia polymorpha GN=ndhD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.568e-23
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            FFLAG SYDR R   LD+MGG+   +PKIFTLF+  SMASLALPGMSGF+AEL++F G+I +  +  + KI+I  +   G+ILTPIY
Sbjct:  346 FFLAGISYDRTRTLVLDQMGGIGNSMPKIFTLFTSCSMASLALPGMSGFIAELMIFLGVIDNPNYSSLFKIIIIIIQGIGIILTPIY 432          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_CHAGL (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Chaetosphaeridium globosum GN=ndhD PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.568e-23
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            FFLAGTSYDRIR  +LD+MGG++  +PKIF +F+  ++ASLALPGMSGFVAEL+VF G + S  +      +ITF+ A G+ILTPIY
Sbjct:  347 FFLAGTSYDRIRTLFLDQMGGISTTMPKIFAMFTTCALASLALPGMSGFVAELMVFLGFLKSNAYSFDFIALITFLEAVGIILTPIY 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_HUPLU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Huperzia lucidula GN=ndhD PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.463e-22
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            F LAGTSYDR R  +LD+MGG+   +PK FT+FS  SMASLALPG SGF AE +VF GI++ + + L  KI+IT V A G+ILTPIY
Sbjct:  348 FSLAGTSYDRTRTPFLDQMGGIGTSMPKTFTMFSSFSMASLALPGTSGFAAESMVFPGIVSGKNYSLPFKIIITIVEAIGIILTPIY 434          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C2_ANASP (NAD(P)H-quinone oxidoreductase chain 4-2 OS=Anabaena sp. (strain PCC 7120) GN=ndhD2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.496e-22
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            FFL G +YDR     LDEMGG+   +PKIF +F+  SMASLALPGMSGFVAEL+VF G  TS  +    K+++ F+MA G+ILTPIY
Sbjct:  347 FFLVGATYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTPIY 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C1_ANAVT (NAD(P)H-quinone oxidoreductase chain 4 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhD1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.496e-22
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            FFL G +YDR     LDEMGG+   +PKIF +F+  SMASLALPGMSGFVAEL+VF G  TS  +    K+++ F+MA G+ILTPIY
Sbjct:  347 FFLVGATYDRTHTLMLDEMGGVGKRMPKIFAMFTACSMASLALPGMSGFVAELMVFVGFATSDAYSSTFKVIVVFLMAVGVILTPIY 433          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_STAPU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Staurastrum punctulatum GN=ndhD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.257e-22
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            FFLAGT+YDR R   LD+MGG   P+PK F+ F+  +MASLALPGMSGFVAEL++F GI+ S  +  + K +IT V   G+ILTPIY
Sbjct:  346 FFLAGTTYDRSRTLILDDMGGWGSPLPKTFSTFTACAMASLALPGMSGFVAELMIFLGIVASSVYSPLFKAIITCVEGIGIILTPIY 432          
BLAST of CK935006 vs. ExPASy Swiss-Prot
Match: NU4C_CHLAT (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Chlorokybus atmophyticus GN=ndhD PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.560e-22
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = -2
Query:    8 FFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAXGMILTPIY 268
            FFLAGT+YDR R   L++MGG+A  +PK F +F+  S+ASLALPGMSGFVAEL+VF G  TS  +    K +ITF+   G+ILTPIY
Sbjct:  345 FFLAGTTYDRTRTLILEDMGGVAKKMPKTFAMFTTCSLASLALPGMSGFVAELMVFLGFATSASYSFEFKAIITFLEGIGIILTPIY 431          
The following BLAST results are available for this feature:
BLAST of CK935006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 137
Match NameE-valueIdentityDescription
NU4C_CYCTA4.114e-2567.82NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_PSINU7.018e-2558.62NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_ADICA2.948e-2359.77NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_MARPO6.568e-2358.62NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CHAGL6.568e-2359.77NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_HUPLU1.463e-2260.92NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C2_ANASP2.496e-2258.62NAD(P)H-quinone oxidoreductase chain 4-2 OS=Anabae... [more]
NU4C1_ANAVT2.496e-2258.62NAD(P)H-quinone oxidoreductase chain 4 1 OS=Anabae... [more]
NU4C_STAPU4.257e-2258.62NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]
NU4C_CHLAT5.560e-2258.62NAD(P)H-quinone oxidoreductase chain 4, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004224_A08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935006 ID=CK935006; Name=CK935006; organism=Citrus sinensis; type=EST; length=269bp
GCGGGGAATAAATAGGAGTTAATATCATTCCNNNTGCCATTACAAAAGTG
ATTACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAA
AAATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGG
AGGCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATA
GCTAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACT
CGTTCCTGCCAAAAAAAAA
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