CK935052

Overview
NameCK935052
Unique NameCK935052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935052 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 54/213 (25.35%), Postives = 97/213 (45.54%), Query Frame = 2
Query:   29 YSEFRKRAREKMESSSSKYFLILLAIFYHINSSSASRNVPSK----ITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAM----AKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDETTCSDGFEKNTVN-GKVVRGQIVKIAHMTSNALALINSYAS 640
            Y +  KR R  +  + S   LI + +   +  S    +  SK    + AS + +K  C+ T Y   C  +L ++     T P  L   + NVT+      AK +  +M      L    R   A+  C E +  ++DEL  S  E+G  +    +  + +++ W+SAA++ E TC +GF+    N G+ ++  +     +T N LA+I+  ++
Sbjct:    5 YDDESKRKRRYIVITISSVLLISMVVAVTVGVSLNKHDGDSKGKAEVNASVKAVKDVCAPTDYRKTCEDTLIKNGKNT-TDPMELVKTAFNVTMKQITDAAKKSQTIM-----ELQKDSRTRMALDQCKELMDYALDELSNSFEELGKFEFHLLDEALINLRIWLSAAISHEETCLEGFQGTQGNAGETMKKALKTAIELTHNGLAIISEMSN 211          
BLAST of CK935052 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.551e-11
Identity = 51/197 (25.89%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   95 LLAIFYHINSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREAEAMQDCLEELSDSVDELRKSIGEMG------LIKASNFELTMNDIQTWVSAALTDETTCSDGFEK---------NTVNGKVVRGQIVKIAHMTSNALALINSYAS 640
            ++A   H N + ++ + P ++T ST  +K  CS T +P  C  S+++  S   T P+ L   SL V +    S S +  K+SK    + R   A++ C + + D++D L  ++  +        + +S  E    D++TW+SA +TD  TC D  ++         N+   + ++  + +    TSN+LA+++   S
Sbjct:   47 VVATVVHKNKNESTPSPPPELTPSTS-LKAICSVTRFPESCISSISKLPSSNTTDPETLFKLSLKVIIDELDSISDLPEKLSKETEDE-RIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIE----DLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKILS 237          
The following BLAST results are available for this feature:
BLAST of CK935052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PME21_ARATH5.329e-1225.35Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME1_ARATH1.551e-1125.89Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004222_D11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935052 ID=CK935052; Name=CK935052; organism=Citrus sinensis; type=EST; length=778bp
GGGGATGATCATCACAATATAGCCCATATATTCAGAATTCAGAAAAAGAG
CAAGAGAGAAAATGGAATCTTCATCATCAAAATATTTCCTCATTTTACTA
GCCATTTTTTACCACATAAACTCAAGCTCAGCATCCAGAAATGTCCCCTC
TAAAATTACAGCTAGCACTGAGTTCATCAAAACATCTTGCAGTTCAACAA
CCTATCCAACACTTTGCTATAAATCCCTTGCTAGACATGCAAGCTTAATC
CAAACAAGCCCTAAGCTCCTCGCCCATGCATCCCTCAACGTGACCCTTGC
AATGGCTAAATCAACGTCAGCCGTCATGTTAAAGATATCGAAAAGCCTTG
GAATGAAGCCTAGAGAGGCGGAAGCCATGCAAGATTGTTTGGAGGAGCTG
AGTGATTCAGTTGATGAACTCAGAAAGTCTATTGGCGAAATGGGTCTGAT
CAAAGCTTCTAACTTTGAACTCACAATGAATGATATACAGACTTGGGTTA
GTGCTGCTTTGACTGATGAGACTACTTGCAGCGATGGATTTGAAAAAAAT
ACGGTTAATGGGAAAGTCGTGAGAGGCCAGATTGTGAAGATTGCCCATAT
GACTAGCAATGCCTTGGCTTTGATCAATAGTTATGCTTCGCTTCATGCTT
AATTAGAAACTGTGATGATGATGAGCTTCAGCATTAATGTTAACTCACAT
ATGTGTATATTGTTAATCTTTTGTCGGGAAATAAAATTCTATTTAATACA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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