CK935201

Overview
NameCK935201
Unique NameCK935201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13581 contig Csv1_Contig13581:7..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935201 vs. ExPASy Swiss-Prot
Match: YG2V_YEAST (Uncharacterized protein YGR110W OS=Saccharomyces cerevisiae GN=YGR110W PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 50/144 (34.72%), Postives = 70/144 (48.61%), Query Frame = 2 
Query:  362 DEPRFINTVTFDSKE------DSPTLIMVHGYGASQGFFFRNFD---ALASRFRVIAIDQLGCGGSSRPDFTCK----STEETEAWFIDSFEEWRKAKNLSN----FILLGHSLGGYVAAKYALKHPE--HVQHLILVGPAGFS 736
            DE  +IN      ++      D   L+ +HGYGA  GFF +NF+    L + + + AID  G G SSRP F  +    +    + WF +    W   +NL N     I++ HSLG Y+ A Y  K+ E    + LIL  PAG S
Sbjct:  118 DEGNYINEFCIRPRKTSVPEADLKHLVFIHGYGAGLGFFIKNFEDIPLLDNEWCIHAIDLPGYGFSSRPKFPFEYPRDNIHSVQDWFHERIHTWFSKRNLLNRPEKNIVMAHSLGSYLMALYLQKYKESPSFKKLILCSPAGVS 261
[Close]
BLAST of CK935201 vs. ExPASy Swiss-Prot
Match: ECM18_YEAST (Protein ECM18 OS=Saccharomyces cerevisiae GN=ECM18 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 44/138 (31.88%), Postives = 63/138 (45.65%), Query Frame = 2 
Query:  410 SPTLIMVHGYGASQGFFFRNFDALASRFR-VIAIDQLGCGGSSRPDFTCKST------------------------------EETEAWFIDSFEEWRKAKNLSNFILLGHSLGGYVAAKYALKHPEHVQHLILVGPAG 730
            +PTL+ +HGY AS   FFRN+  L+   R + +ID    G SS P     +T                              +  E +++D  E+WR    L    ++GHS GGY++ KYA+K+P  V  L LV P G
Sbjct:  127 TPTLL-IHGYAASSMSFFRNYPGLSKHIRNLYSIDMPASGLSSVPSLEINTTTPLPLDIKFIGENKFKVPYTINANHNKFVIQMYEDFYLDRIEQWRIDNKLGKMNVVGHSFGGYLSFKYAVKYPNSVNKLCLVSPLG 263
The following BLAST results are available for this feature:
BLAST of CK935201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YG2V_YEAST5.848e-1234.72Uncharacterized protein YGR110W OS=Saccharomyces c... [more]
ECM18_YEAST3.790e-1131.88Protein ECM18 OS=Saccharomyces cerevisiae GN=ECM18... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_F02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935201 ID=CK935201; Name=CK935201; organism=Citrus sinensis; type=EST; length=821bp
GGGGGGGTTCCNNNATAATTATCGATAATTGATTCACCGGCACTGTTCCT
GCTCAGCAATCGTTTACCCAAATTGTATGAATCTGCGGGGGTCAAGCTCA
ATTCCGAAAATGGCAGAAGAAATTAGCAAGAGCGAGCTAAGATCCTCTGC
TGCTGCCACATCAACACCATCATCATCTACGACTGCAAAATCGAGATGGT
CCTGGCCGTCCGTCCTCCGTTGGATTCCCACTTCTACCAATCACATCATT
GCCGCCGAAAAGCGCCTTCTCTCTATAATCAAGACTCCATATGTTCAAGA
ACAAGTTAATATAGGTTCAAGTCCACCTGGGTCGAAAATCAGGTGGTTTC
GTTCTTCAAGCGATGAACCAAGGTTCATCAACACGGTTACTTTTGATAGC
AAAGAGGATTCTCCCACTCTCATAATGGTTCATGGATATGGAGCATCTCA
GGGCTTCTTCTTTCGCAATTTTGATGCTCTTGCTAGTCGTTTCAGAGTAA
TTGCTATTGATCAACTTGGTTGCGGTGGATCAAGTAGGCCTGACTTTACG
TGCAAAAGCACAGAAGAAACTGAAGCATGGTTTATTGATTCCTTTGAGGA
ATGGCGCAAAGCCAAAAACCTCAGCAACTTCATTTTACTTGGGCATTCTC
TTGGAGGGTATGTTGCCGCTAAATATGCTCTCAAGCATCCCGAGCATGTC
CAGCACTTGATTTTAGTTGGACCTGCTGGATTTTCAGCTCAATCAGATGC
CAAATCTGAGTGGATTACCAAGTTCAGGGCAACATGGAAAAGAGCAATTT
TGAACCACTTGTGGGAATCTA
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