CK935218

Overview
NameCK935218
Unique NameCK935218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935218_ssr828 microsatellite CK935218_ssr828:828..841. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9272 contig Csv1_Contig9272:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 287
            E+RYRGVR+RPWGRYAAEIRDP KK RVWLG+F+T                G+KA TNFP
Sbjct:   50 EVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.738e-13
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 3
Query:  114 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNEIL 305
            RYRGVR+RPWGRYAAEIRDP  K R WLGTFDT                GAKA+TNF  P  ++
Sbjct:   56 RYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVI 119          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.775e-12
Identity = 36/61 (59.02%), Postives = 38/61 (62.30%), Query Frame = 3
Query:  111 IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 293
            IRYRGVR+RPWGRYAAEIRDP  K R WLGTFDT                G KA+TNF  P
Sbjct:   56 IRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYP 116          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 3
Query:  114 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 287
            +YRGVR+RPWG++AAEIRDP K TRVWLGTF+T                G+KAK NFP
Sbjct:   60 KYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 35/64 (54.69%), Postives = 39/64 (60.94%), Query Frame = 3
Query:  114 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNEIL 305
            RYRGVR+RPWG++AAEIRDP +  RVWLGTFDT                G KAK NFP    IL
Sbjct:   76 RYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRIL 139          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 3
Query:  114 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 287
            RY+G+R+RPWGR+AAEIRDP K  RVWLGTF+T                GAKAK NFP
Sbjct:   24 RYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFP 81          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 3
Query:  117 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 287
            YRGVR+RPWG++AAEIRDP K  RVWLGTFDT                G KAK NFP
Sbjct:   70 YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  114 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 293
            +YRGVR+RPWG++AAEIRDP  +TR+WLGTF T                G KA TNF TP
Sbjct:  104 KYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTP 163          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 3
Query:  117 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 287
            YRGVR+RPWG++AAEIRDP K  RVWLGTF+T                G+KAK NFP
Sbjct:   92 YRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 3
Query:  117 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 287
            YRGVR+RPWG++AAEIRDP K  RVWLGTF+T                G+KAK NFP
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
The following BLAST results are available for this feature:
BLAST of CK935218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERF77_ARATH9.411e-1460.00Ethylene-responsive transcription factor 10 OS=Ara... [more]
ESR1_ARATH2.738e-1356.25Ethylene-responsive transcription factor ESR1 OS=A... [more]
ESR2_ARATH1.775e-1259.02Ethylene-responsive transcription factor ESR2 OS=A... [more]
RAP26_ARATH3.954e-1256.90Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF110_ARATH5.164e-1254.69Ethylene-responsive transcription factor ERF110 OS... [more]
ERF73_ARATH8.808e-1256.90Ethylene-responsive transcription factor ERF073 OS... [more]
EF112_ARATH1.150e-1157.89Ethylene-responsive transcription factor ERF112 OS... [more]
CRF6_ARATH1.962e-1153.33Ethylene-responsive transcription factor CRF6 OS=A... [more]
EF115_ARATH2.563e-1156.14Ethylene-responsive transcription factor ERF115 OS... [more]
EF114_ARATH2.563e-1156.14Ethylene-responsive transcription factor ERF114 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_D11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935218 ID=CK935218; Name=CK935218; organism=Citrus sinensis; type=EST; length=899bp
GCGGGGCTTCAAGAGCTAACAAACAACTTGCNNNTCTGTTCAAAATGGCT
CCGAGAGATAAGCTCAACAAACCATCCTCTAACCCGAATCCGAATTCGAA
GGATATGGAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGTT
ACGCCGCCGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGGC
ACCTTCGACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGCG
TGAGTTCCGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAAA
TCCTTGGCACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTCA
TCCTCTCCTCCTCCGCCGACGCTGCTGCCACAGCCACAGCCGCTGCCACA
GCTAAACCTAGCTCTCAACAGCTACCGTAATGCCGGCGCGTGCCTCCCAG
TCGCCACGGCGCGTCCGGTCCTTTTCTTCGACGTTTTCTCCTCCGGTGGT
ACTGTTGCGACTCACCGTGATGCACGCTGTGTTGGTTTTTATCCCGGCGG
GACCCAGAGCGACTCCGATTCGTCATCGGTCGTCGTTGATTACGATCCTC
GTTCGTCTGAGAGAAGATTGATTGATCTTGATCTTGATCTTAATCTCCCT
CCTCCACCTGAAGTGGCTTGAGTTTTTGGACTGAAGCTAATGCTGACGTG
TACGGCGATGGTGATGTGTATATAGTGACCCTAGCAAGATCCTTTGGTCG
ATCTTCGTATTTTTGTTTTTGCAACTGGAAAATCTAGGACGGTTACTCCA
CGTTGTTTTTAACTGCTGCCGTTAGAAATATATATATATATGTGTTTAAT
GCTTAGTCAAATGATATAAGAGAAGTGAGAACCCTTTTTTGAAAAAAAA
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