CK935221

Overview
NameCK935221
Unique NameCK935221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:1..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_GEOTN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=fabZ PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.217e-29
Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKA 843
            ++DI QI+ I+PHR+PFLLVDR++E   G  AV IKNV+ N++FF GHFPE P+MPGVL+VEA+AQVG +V+LQ E    R   FFAGID  RF+K V  GD L  R+ +  L+ R  I K +G A
Sbjct:    1 MLDIQQIQAIIPHRYPFLLVDRILEIEEGKRAVGIKNVSANESFFAGHFPEYPVMPGVLIVEALAQVGAVVLLQSEENRGR-LAFFAGIDNCRFKKQVQPGDQL--RLEVEILRARGSIGKGKGVA 123          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_GEOSL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter sulfurreducens GN=fabZ PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.217e-29
Identity = 67/114 (58.77%), Postives = 83/114 (72.81%), Query Frame = 1
Query:  463 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGL---VMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTL 795
            TV DIN+I  ILPHR+PFLLVDR++EY  G   V IKNV+IN+ FF GHFP  P+MPGVL+VEAMAQVGG+   V L  EV    +  +FA ID V+FRKPV+ GD L + +T+
Sbjct:    3 TVFDINEIMKILPHRYPFLLVDRIVEYVAGERIVGIKNVSINEPFFQGHFPGHPVMPGVLIVEAMAQVGGIYAYVTLGDEV--RDKVCYFASIDNVKFRKPVVPGDQLRIEVTI 114          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CLOD6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium difficile (strain 630) GN=fabZ PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.217e-29
Identity = 65/127 (51.18%), Postives = 90/127 (70.87%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            +++I++I+ ++PHR+PFLLVD++ E   G  AV IKNVT+N+ FF GHFPE P+MPGVL+VEA+AQV G+ M+  E    +    FAGIDKVR ++ V  GDTL M + +  L+K   IAK + KAY
Sbjct:    1 MLNIDEIKKLIPHRYPFLLVDKITELEVGKRAVGIKNVTVNEPFFQGHFPEYPLMPGVLIVEALAQVCGVAMMSVEENKGKLG-VFAGIDKVRIKREVRPGDTLTMEVEMTTLRK--NIAKADAKAY 124          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CALS8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=fabZ PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.508e-29
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 1
Query:  472 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAK 828
            D+  I  ILPHR+PFLLVDR+IE   G  A  IKNVTIN+ FF GHFP  P+MPGVL+VEAMAQVG + +L  E    +   FFAGIDKVRF+K V  GD L++   L+ L+   G AK
Sbjct:    3 DVTSILQILPHRYPFLLVDRIIEIEEGKKAKGIKNVTINEPFFQGHFPGNPVMPGVLIVEAMAQVGAVAILSKEEFKGKTP-FFAGIDKVRFKKVVRPGDVLLIETELISLKGYIGKAK 120          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_ACIAC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.508e-29
Identity = 67/128 (52.34%), Postives = 88/128 (68.75%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVM--LQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKA 843
            +MDI+QI  +LPHR+PFLLVDRV+E   G    AIKNVTIN+ FF GHFP RP+MPGVLM+EA+AQ  GL+   +  E  G  + F+F GID  RF++PV  GD L++ + L ++  + GI K  G A
Sbjct:    1 MMDIHQILKLLPHRYPFLLVDRVVELERGERIQAIKNVTINEPFFTGHFPNRPVMPGVLMLEALAQAAGLLSFDMMGEAPGDDKVFYFVGIDGARFKRPVEPGDQLILDVKLDRI--KGGIYKFGGVA 126          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_NITMU ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=fabZ PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.193e-29
Identity = 63/127 (49.61%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  469 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKA 843
            MDI++I   LPHR+P LLVDRV+ + PG S  A+KNVTIN+ FF GHFP  P+MPGVL++EA+AQ   L+ L+     + EN  ++F GID  RF++PV  GD L+++ T++K  +R GI K   +A
Sbjct:    1 MDIHEILKYLPHRYPLLLVDRVLAFEPGKSLTALKNVTINEPFFTGHFPHHPVMPGVLVIEALAQAAALLTLKTSNVEADENSIYYFVGIDNARFKRPVEPGDQLILKATVLK--ERIGIWKYAARA 125          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_HERA2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=fabZ PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.193e-29
Identity = 64/119 (53.78%), Postives = 88/119 (73.95%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML-QPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFG 819
            ++ +  I  ILPHR PFLLVDR++E   G+ AV +KNVT+N+ FF GHFP RP+MPGVL+VEA+AQVG +++L QPE  G  +   FAGID  RF++PV  GDTL + ++L K+++R G
Sbjct:    1 MLTVEDILAILPHRPPFLLVDRILEIEDGLRAVGLKNVTMNEPFFVGHFPGRPVMPGVLIVEALAQVGAVIILRQPEYVG--KIVMFAGIDDFRFKRPVTPGDTLKLEVSLDKMRRRIG 117          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CLOPE ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium perfringens GN=fabZ PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.193e-29
Identity = 64/121 (52.89%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAK 828
            +M+IN+I++ILPH++PFLLVD+V E       VA KNVTIN+ FF GHFP+ P+MPGVL+VEA+AQ G + +L  E    +   FFAGIDKVRF+K V+ GDTL + + ++KL+   G  K
Sbjct:    1 MMNINEIKEILPHKYPFLLVDKVEEITES-KVVAYKNVTINEPFFQGHFPDYPVMPGVLIVEALAQAGAIALLNKEEFKGKTP-FFAGIDKVRFKKQVLPGDTLRLEVEIIKLRGSIGFGK 119          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_AZOSE ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Azoarcus sp. (strain EbN1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.193e-29
Identity = 64/130 (49.23%), Postives = 89/130 (68.46%), Query Frame = 1
Query:  469 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGIDKVRFRKPVIAGDTLVMRMTLVK----LQKRFGIAKMEGK 840
            MDIN+I   LPHR+PFLLVDRV+E   G   +A+KNVT+N+ FFPGHFP  P+MPGVL+VEAMAQ   L+  +       EN   +FAGID VRF++PV+ GD L+  + + +    + K  G+A+++G+
Sbjct:    1 MDINEILQYLPHRYPFLLVDRVLEIEEGKRILALKNVTMNEPFFPGHFPHHPVMPGVLIVEAMAQAAALLSFKSMGVKPDENSVVYFAGIDNVRFKRPVVPGDQLLFDVVITQSKRNIYKYKGVARVDGE 130          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_LISW6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=fabZ PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.227e-28
Identity = 65/126 (51.59%), Postives = 86/126 (68.25%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKA 843
            ++DI +I++ILPHR+PFLLVDRVI    G    AIKNVT N+ FF GHFPE P+MPGVL+VEA+AQ  G+ M+Q E    +    FAGID  RF++ VI GD L++   + ++  R  IAK + KA
Sbjct:    1 MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEFFNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIG-LFAGIDGCRFKRQVIPGDQLLLEAEITRM--RGAIAKAKVKA 123          
The following BLAST results are available for this feature:
BLAST of CK935221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_GEOTN4.217e-2954.76(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOSL4.217e-2958.77(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOD64.217e-2951.18(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CALS85.508e-2956.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACIAC5.508e-2952.34(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_NITMU7.193e-2949.61(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_HERA27.193e-2953.78(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOPE7.193e-2952.89(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_AZOSE7.193e-2949.23(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LISW61.227e-2851.59(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_E02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935221 ID=CK935221; Name=CK935221; organism=Citrus sinensis; type=EST; length=847bp
GGGGGCTTTACACAGTACAACTTTTGCCAACACCCAATCCCATCATTGGT
CTCTCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTACCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAGACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGATAAAGTAAGATTCAGG
AAACCAGTGATTGCAGGTGACACTTTGGTCATGAGAATGACACTTGTCAA
GCTACAGAAACGCTTCGGAATAGCAAAGATGGAAGGGAAAGCTTATG
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