CK935221

Overview
NameCK935221
Unique NameCK935221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:1..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CHLAA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=fabZ PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.335e-24
Identity = 59/127 (46.46%), Postives = 85/127 (66.93%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKA 843
            ++ I +I  ++PHR+PFLLVDR++E  PGV AV  K V+ N+ +F GHFP  PIMPGVL++EA+AQ G +  L  PE  G  +   FAGID  RF++ V  GDTL + + L K+++  G+ K + +A
Sbjct:    1 MLSIQEIMALIPHRYPFLLVDRIMELEPGVRAVGEKLVSANEPYFQGHFPGNPIMPGVLILEALAQTGAVAALSAPENAG--KLVLFAGIDGARFKRVVRPGDTLRLEVQLEKMRR--GVGKGQARA 123          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CAMC5 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Campylobacter curvus (strain 525.92) GN=fabZ PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.335e-24
Identity = 62/132 (46.97%), Postives = 82/132 (62.12%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSREN--FFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            ++D+ +I+ ILPHRFPFLL+DRV E  P    VA KNVTI +  F GHFP  PI PGV++VE MAQ GG++    +  E     EN   +F  IDK +FR PV  GD L  R+ ++K   +  I  ++GKAY
Sbjct:    1 MIDVVEIQKILPHRFPFLLIDRVTELEPAKHIVAYKNVTIGEPIFQGHFPGHPIYPGVMIVEGMAQAGGVLAFKSMSDEHQADIENKVVYFMSIDKAKFRHPVRPGDRLEYRLEVLK--HKGNIWVLDGKAY 130          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_PETMO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=fabZ PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.967e-24
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  469 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENF--FFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKA 843
            M+I +I  ILPHR+PFLLVD V+E N      A KNV+IN++FF GHFP  PIMPGVL+VE MAQ  GL++L+     + EN    F GIDK RF+K V  GD L+  + +  LQK+  + K++G A
Sbjct:    1 MNIEEIMKILPHRYPFLLVDGVLELNEE-KIKAFKNVSINESFFQGHFPNYPIMPGVLIVEGMAQTAGLLLLK----DTDENVIPLFTGIDKARFKKEVRPGDKLIYDLEI--LQKKANMFKLKGIA 120          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_SULDN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=fabZ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 54/132 (40.91%), Postives = 84/132 (63.64%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-----PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            +MD+ +I+ I+PHR+PFLL+DRV +     S +  KN+TI DN F GHFP  PI PGV+++E MAQ GG++  +      E   + +  +F  ID+ +FR PV  GD L  R++++K + +  +  ++GKAY
Sbjct:    2 IMDVIEIQKIIPHRYPFLLLDRVTQIKENESLIGYKNITIGDNVFQGHFPGHPIYPGVMILEGMAQAGGILAFKSMGNMTEEEAASKVVYFMSIDRAKFRAPVKPGDRLEYRISVIKNKGQIWV--LDGKAY 131          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_RICB8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rickettsia bellii (strain OSU 85-389) GN=fabZ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = 1
Query:  469 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTL 795
            +DI +I D++PHR+PFLLVD+V+E +P  S   IKNVT+N+  F GHFP RP+MPGVLMVEAM Q+  +++ +       +  F   I+  +FRK V  GDT+ +  T+
Sbjct:    3 IDITEIMDLIPHRYPFLLVDKVVEIDPNKSITGIKNVTVNEPQFTGHFPARPVMPGVLMVEAMTQLAAILVAKSLGSTKNKEVFLMAIENSKFRKVVQPGDTMHIHATI 111          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_ANAD2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=fabZ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 57/133 (42.86%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  463 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGL---VMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVK----LQKRFGIAKMEGK 840
            +++D+  I+ +LPHR PFLLVDRV+E+      VA+K VT+N+ FF GHFP +P+MPGVL++EA+AQ   L   + LQP+    +  +   GID  RFR+PV+ GD L + + + K    + K+ G+A+++G+
Sbjct:    9 SILDVVGIQKLLPHRPPFLLVDRVVEFEAHRRLVALKGVTMNEPFFQGHFPAQPVMPGVLILEALAQAAALLATMSLQPDEVKDKITYLM-GIDGARFRRPVVPGDRLELEVEVTKQKGAVWKQTGVARVDGQ 140          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_AGRVS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=fabZ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 54/110 (49.09%), Postives = 75/110 (68.18%), Query Frame = 1
Query:  472 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVK 801
            DI +I  +LPHR+PFLLVDR+I+ +   +A+ IKNVT N+  F GHFPE+PIMPGVL++E MAQ  G +  + + G + +  +F  ID  RFRKPV+ GD +   +T  K
Sbjct:   12 DILEIMKLLPHRYPFLLVDRIIDIDGDNAAIGIKNVTANEPQFTGHFPEQPIMPGVLLIEGMAQTAGAICAR-KAGTAGDLVYFMTIDNARFRKPVVPGDRVEFHVTKQK 120          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_WOLTR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=fabZ PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1
Query:  472 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSREN--FFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            +I+ I  ILPH +PFLLVDRVIE +P  S  AIKNVT N+ FF GHFP  PIMPGVL+VE++AQ   + +L      + EN   +   I+  +FRKPV  GDTL+++        R  + K E  AY
Sbjct:    4 NISDIIKILPHSYPFLLVDRVIECDPSKSIKAIKNVTFNEPFFIGHFPNHPIMPGVLIVESLAQASAICILGKGSKSTMENKVVYLMSIENAKFRKPVTPGDTLILQADF--KNARLSVCKFECFAY 128          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CLOTH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=fabZ PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  481 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKM 831
            +I++I+PH++PFLL+D+++E  PG  AV IKNVTIN+ FF GHFP  PIMPGVL+VEA+AQ   +  L  E    +    F GI+ ++FR+ V+ GDTL +    +  +   G AK+
Sbjct:    6 EIQNIIPHKYPFLLIDKILEVEPGKRAVGIKNVTINEPFFQGHFPGNPIMPGVLIVEALAQTACVAGLMLEENKGKLG-VFTGIESMKFRRQVVPGDTLRLEAEFLAFKLGMGKAKV 121          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CAMLR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=fabZ PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 57/130 (43.85%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV---MLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            ++D+ QI+ ILPHR+PFLLVD+++E          KN++I+D+ F GHFP+ PI PGVL++E MAQ GG++    +  +V  S +  +F GID  +FR PV  GD L   M++VK   R  +   EGKA+
Sbjct:    1 MIDVMQIQKILPHRYPFLLVDKIVELKTKQIVKGYKNISISDHVFMGHFPDHPIYPGVLILEGMAQTGGVLAFESMDDKVDPSSKVVYFTGIDNAKFRNPVRPGDRLDYEMSVVK--NRGNLWIFEGKAF 128          
The following BLAST results are available for this feature:
BLAST of CK935221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_CHLAA5.335e-2446.46(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CAMC55.335e-2446.97(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PETMO6.967e-2450.39(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SULDN9.099e-2440.91(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RICB89.099e-2446.79(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANAD29.099e-2442.86(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_AGRVS9.099e-2449.09(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_WOLTR1.188e-2347.24(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOTH1.188e-2346.15(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CAMLR1.188e-2343.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_E02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935221 ID=CK935221; Name=CK935221; organism=Citrus sinensis; type=EST; length=847bp
GGGGGCTTTACACAGTACAACTTTTGCCAACACCCAATCCCATCATTGGT
CTCTCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTACCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAGACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGATAAAGTAAGATTCAGG
AAACCAGTGATTGCAGGTGACACTTTGGTCATGAGAATGACACTTGTCAA
GCTACAGAAACGCTTCGGAATAGCAAAGATGGAAGGGAAAGCTTATG
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