CK935223
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.378e-35 Identity = 109/290 (37.59%), Postives = 160/290 (55.17%), Query Frame = 2 Query: 8 DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLA---KSGR-KSRDITRTIIPGSPAAAEAM--KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSP-DQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 856 DP VSTGQTY+RS IQ+W+ GN+ CPKT I Q+C + I +GR K+ D + + G +A A+ KL S+ + E++ A EIR L+K + NR I E+GAIP L+ LL S D QENAV +L LS + K++I+ +G + I+ VL++G S+EAR+ AAATLF L+ + +IG + AI ALV L++ G+ GKK+A A+F L + QGN + + AG V L +L S+ + ++L +L+ LA Sbjct: 258 DPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLSSQSI---------EDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAG-SMEARENAAATLFSLSLADENKIIIGASG-AIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLA 536
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34 Identity = 95/266 (35.71%), Postives = 136/266 (51.13%), Query Frame = 2 Query: 8 DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLAKSGRKSRDITRTIIPGSPA----AAEAMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVES-GGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLAD 790 DPV V+TGQTYDR SI W+++G+ CPKTG I +C D I G G PA A E K+M FL +L + N +E+R LAKS+ R+CI E+GAIP L+ L + +Q NAV +L LS K I+E+ G L +++VL+SG + EA+ AAATLF L V YR+ +G + + LV L ++G K++A+VAI L+ + N + ++AG + D Sbjct: 289 DPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWCRDQKIPFELYGDGG---------GEPAPCKEAVEFTKMMVSFLIEKLSVA---DSNGVVFELRALAKSDTVARACIAEAGAIPKLVRYLATECPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLRSGATWEAKANAAATLFSLAGVSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVAILNLVAERENVGRFVEAGVMGAAGD 542
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.994e-26 Identity = 77/192 (40.10%), Postives = 118/192 (61.46%), Query Frame = 2 Query: 281 LARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 856 L L + + + +A E+RLLAK N+ NR I SGAI L+ LL+S D QENAV ALL LS + + KK I ++G ++ ++ VL++G S EA++ +AATLF L+ ++ + IG++ AI LV L+ GT GKK+A A+F L + Q N ++ +G V L D++ + ++ ++AVLANLA Sbjct: 546 LVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENG-SSEAKENSAATLFSLSVIEENKIKIGQS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPA--AGMVDKAVAVLANLA 733
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25 Identity = 76/192 (39.58%), Postives = 119/192 (61.98%), Query Frame = 2 Query: 281 LARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 856 L L G+N+ K AA EIR L ++I NR I GAI PLL+LL+S ++ QE+AV ALL LS K +IVE G ++ ++ VL +G + A++ +AA+LF L+ ++ R+ IG++ AI ALV L+ +GT GKK+A A+F L ++ N +++ A V L ++L E++ ++A+LANL+ Sbjct: 477 LVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTG-NDRAKENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPD--LEMVDKAVALLANLS 665
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 8.379e-25 Identity = 70/182 (38.46%), Postives = 111/182 (60.99%), Query Frame = 2 Query: 311 EEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 856 + + +A IR+LA+++ NR I AIP L++LL+S D+ +Q +AV LL LS + + K +I ESG + ++ VLK+G EA+ +AATLF L+ ++ Y+ IGE AI LV L+ G+ GKK+A A+F L + N KV++AG V L +++ + ++ ++ VLANLA Sbjct: 436 DTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEA-GAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPA--FGMVEKAVVVLANLA 614
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB9_ARATH (U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.523e-21 Identity = 84/288 (29.17%), Postives = 141/288 (48.96%), Query Frame = 2 Query: 8 DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLAKSGRKSRDITRTIIPGSPAAAEAMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVES-GAIPPLLNLLF---SPDQCVQENAVAALLKLSKH-TSGKKVIVESGG-LKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANL 853 DPV +++GQTYD+ IQKWL +GN CPKT I ++C NG+ KS+ + ++ + L + ++K+ AA E+RLL + R+ ES I L+N L +PD+ +QE+ V LL +S H S KK++ E+ + +++ L+ G ++ R AAA +F L+++ + LIG++ P L+ L+EEG K+ AIF L ++ N + + G V +L +++ + + LA+LA L Sbjct: 89 DPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLIREMISKWCKKNGLE-----TKSQYHPNLVNEDETVTRSDREIFNSLLCKVSSSNLQDQKS-AAKELRLLTRKGTEFRALFGESPDEITRLVNPLLHGSNPDEKLQEDVVTTLLNISIHDDSNKKLVCENPNVIPLLIDALRRG-TVATRSNAAAAIFTLSALDSNKVLIGKSGILKP-LIDLLEEGNPLAIKDVAAAIFTLCIAHENRSRAVRDGAVRVLGKKISNG---LYVDELLAILAML 365
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB8_ARATH (U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.523e-21 Identity = 84/280 (30.00%), Postives = 139/280 (49.64%), Query Frame = 2 Query: 5 ADPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLAKSGRKSRDITRTIIPGSPAAAEAMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVL 844 +DPV + +G T+DR SIQ+W+ +GN CP T + A +SL +S R RT S + ++A L+S +++ +N K ++ + L K + R + ESGA+ L+ + S +Q +QE +++ LL LS K +V G ++ I+ VL+ G S + + IAA L L V+ + IG P AI ALV L+ G D +K + A++ L N ++V+D G+VP+L + A+ + E + L +L Sbjct: 19 SDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPNHALRSLILNFAH--VSLKESSRP-----RTQQEHSHSQSQA--LISTLVSQS---SSNASKLESLTRLVRLTKRDSSIRRKVTESGAVRAALDCVDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGVIRRIVTVLRVG-SPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGNDRERKESATALYALCSFPDNRKRVVDCGSVPILVE--AADSGLERAVEVLGLL 283
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB46_ARATH (Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana GN=PUB46 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15 Identity = 88/286 (30.77%), Postives = 130/286 (45.45%), Query Frame = 2 Query: 8 DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLAKSGRKSRDITRTIIPGSPAAAEAMKLMSRFLARRLFFGTN-EEKNKAAYEIRLLAKS----NIFNRSCIVESGAIPPLLNLLFSPDQCV------QENAVAALLKLSKHTSGKKVIVESG-GLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTV-PLLADILASSNRTELIT 826 +PV +++GQTY++ I +WLK CPKT I Q+C N K P AE L +R+ ++ ++ +AA E+R K +F + I +S I LL+ L + D+ V QEN V AL LS S K VI E+ + ++ K LK G E R+ AAATL L+++ + +IG + +A+ AL+ LIEEG K A +F L + N KV+ AG + I A SN EL++ Sbjct: 87 EPVIIASGQTYEKRYITEWLK-HERTCPKTKQVLSHRLWIPNHLISDLITQWCLVNKYDHQK-------------PSDELVAELFTSDIEALLQRVSSSSSVADQIEAAKELRHQTKKFPNVRVFFVAGIHDS--ITRLLSPLSTLDEAVDSSLELQENIVTALFNLSILESNKTVIAENCLVIPLLTKSLKQGTD-ETRRNAAATLSSLSAIDSNKIIIGNS-EAVKALIDLIEEGDLLATKEATSTVFNLCIVLENKGKVVSAGLIHAATKKIKAGSNVDELLS 354 The following BLAST results are available for this feature:
BLAST of CK935223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935223 ID=CK935223; Name=CK935223; organism=Citrus sinensis; type=EST; length=856bpback to top |