CK935223

Overview
NameCK935223
Unique NameCK935223
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1780 contig Csv1_Contig1780:1..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.378e-35
Identity = 109/290 (37.59%), Postives = 160/290 (55.17%), Query Frame = 2
Query:    8 DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLA---KSGR-KSRDITRTIIPGSPAAAEAM--KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSP-DQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 856
            DP  VSTGQTY+RS IQ+W+  GN+ CPKT                  I Q+C  + I       +GR K+ D +   + G  +A  A+  KL S+ +         E++  A  EIR L+K +  NR  I E+GAIP L+ LL S  D   QENAV  +L LS +   K++I+ +G +  I+ VL++G S+EAR+ AAATLF L+     + +IG +  AI ALV L++ G+  GKK+A  A+F L + QGN  + + AG V  L  +L  S+   +  ++L +L+ LA
Sbjct:  258 DPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLSSQSI---------EDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAG-SMEARENAAATLFSLSLADENKIIIGASG-AIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLA 536          
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB16_ARATH (U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 95/266 (35.71%), Postives = 136/266 (51.13%), Query Frame = 2
Query:    8 DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLAKSGRKSRDITRTIIPGSPA----AAEAMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVES-GGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLAD 790
            DPV V+TGQTYDR SI  W+++G+  CPKTG                 I  +C D  I     G            G PA    A E  K+M  FL  +L      + N   +E+R LAKS+   R+CI E+GAIP L+  L +    +Q NAV  +L LS     K  I+E+ G L  +++VL+SG + EA+  AAATLF L  V  YR+ +G   + +  LV L ++G    K++A+VAI  L+  + N  + ++AG +    D
Sbjct:  289 DPVVVATGQTYDRESIDLWIQSGHNTCPKTGQVLKHTSLVPNRALKNLIVLWCRDQKIPFELYGDGG---------GEPAPCKEAVEFTKMMVSFLIEKLSVA---DSNGVVFELRALAKSDTVARACIAEAGAIPKLVRYLATECPSLQINAVTTILNLSILEQNKTRIMETDGALNGVIEVLRSGATWEAKANAAATLFSLAGVSAYRRRLGRKARVVSGLVDLAKQGPTSSKRDALVAILNLVAERENVGRFVEAGVMGAAGD 542          
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.994e-26
Identity = 77/192 (40.10%), Postives = 118/192 (61.46%), Query Frame = 2
Query:  281 LARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 856
            L   L   + + + +A  E+RLLAK N+ NR  I  SGAI  L+ LL+S D   QENAV ALL LS + + KK I ++G ++ ++ VL++G S EA++ +AATLF L+ ++  +  IG++  AI  LV L+  GT  GKK+A  A+F L + Q N   ++ +G V  L D++  +    ++  ++AVLANLA
Sbjct:  546 LVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENG-SSEAKENSAATLFSLSVIEENKIKIGQS-GAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPA--AGMVDKAVAVLANLA 733          
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.205e-25
Identity = 76/192 (39.58%), Postives = 119/192 (61.98%), Query Frame = 2
Query:  281 LARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 856
            L   L  G+N+ K  AA EIR L  ++I NR  I   GAI PLL+LL+S ++  QE+AV ALL LS     K +IVE G ++ ++ VL +G +  A++ +AA+LF L+ ++  R+ IG++  AI ALV L+ +GT  GKK+A  A+F L ++  N  +++ A  V  L ++L      E++  ++A+LANL+
Sbjct:  477 LVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTG-NDRAKENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPD--LEMVDKAVALLANLS 665          
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.379e-25
Identity = 70/182 (38.46%), Postives = 111/182 (60.99%), Query Frame = 2
Query:  311 EEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 856
            + + +A   IR+LA+++  NR  I    AIP L++LL+S D+ +Q +AV  LL LS + + K +I ESG +  ++ VLK+G   EA+  +AATLF L+ ++ Y+  IGE   AI  LV L+  G+  GKK+A  A+F L +   N  KV++AG V  L +++  +    ++  ++ VLANLA
Sbjct:  436 DTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEA-GAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPA--FGMVEKAVVVLANLA 614          
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB9_ARATH (U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.523e-21
Identity = 84/288 (29.17%), Postives = 141/288 (48.96%), Query Frame = 2
Query:    8 DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLAKSGRKSRDITRTIIPGSPAAAEAMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVES-GAIPPLLNLLF---SPDQCVQENAVAALLKLSKH-TSGKKVIVESGG-LKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANL 853
            DPV +++GQTYD+  IQKWL +GN  CPKT                  I ++C  NG+       KS+     +           ++ +  L +       ++K+ AA E+RLL +     R+   ES   I  L+N L    +PD+ +QE+ V  LL +S H  S KK++ E+   + +++  L+ G ++  R  AAA +F L+++   + LIG++    P L+ L+EEG     K+   AIF L ++  N  + +  G V +L   +++      + + LA+LA L
Sbjct:   89 DPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLIREMISKWCKKNGLE-----TKSQYHPNLVNEDETVTRSDREIFNSLLCKVSSSNLQDQKS-AAKELRLLTRKGTEFRALFGESPDEITRLVNPLLHGSNPDEKLQEDVVTTLLNISIHDDSNKKLVCENPNVIPLLIDALRRG-TVATRSNAAAAIFTLSALDSNKVLIGKSGILKP-LIDLLEEGNPLAIKDVAAAIFTLCIAHENRSRAVRDGAVRVLGKKISNG---LYVDELLAILAML 365          
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB8_ARATH (U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.523e-21
Identity = 84/280 (30.00%), Postives = 139/280 (49.64%), Query Frame = 2
Query:    5 ADPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLAKSGRKSRDITRTIIPGSPAAAEAMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLFSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVL 844
            +DPV + +G T+DR SIQ+W+ +GN  CP T                  +    A   +SL +S R      RT    S + ++A  L+S  +++     +N  K ++   +  L K +   R  + ESGA+   L+ + S +Q +QE +++ LL LS     K  +V  G ++ I+ VL+ G S + + IAA  L  L  V+  +  IG  P AI ALV L+  G D  +K +  A++ L     N ++V+D G+VP+L +  A+ +  E   + L +L
Sbjct:   19 SDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPNHALRSLILNFAH--VSLKESSRP-----RTQQEHSHSQSQA--LISTLVSQS---SSNASKLESLTRLVRLTKRDSSIRRKVTESGAVRAALDCVDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGVIRRIVTVLRVG-SPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSLLRVGNDRERKESATALYALCSFPDNRKRVVDCGSVPILVE--AADSGLERAVEVLGLL 283          
BLAST of CK935223 vs. ExPASy Swiss-Prot
Match: PUB46_ARATH (Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana GN=PUB46 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 88/286 (30.77%), Postives = 130/286 (45.45%), Query Frame = 2
Query:    8 DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXXXIHQFCADNGISLAKSGRKSRDITRTIIPGSPAAAEAMKLMSRFLARRLFFGTN-EEKNKAAYEIRLLAKS----NIFNRSCIVESGAIPPLLNLLFSPDQCV------QENAVAALLKLSKHTSGKKVIVESG-GLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTV-PLLADILASSNRTELIT 826
            +PV +++GQTY++  I +WLK     CPKT                  I Q+C  N     K             P     AE        L +R+   ++  ++ +AA E+R   K      +F  + I +S  I  LL+ L + D+ V      QEN V AL  LS   S K VI E+   + ++ K LK G   E R+ AAATL  L+++   + +IG + +A+ AL+ LIEEG     K A   +F L +   N  KV+ AG +      I A SN  EL++
Sbjct:   87 EPVIIASGQTYEKRYITEWLK-HERTCPKTKQVLSHRLWIPNHLISDLITQWCLVNKYDHQK-------------PSDELVAELFTSDIEALLQRVSSSSSVADQIEAAKELRHQTKKFPNVRVFFVAGIHDS--ITRLLSPLSTLDEAVDSSLELQENIVTALFNLSILESNKTVIAENCLVIPLLTKSLKQGTD-ETRRNAAATLSSLSAIDSNKIIIGNS-EAVKALIDLIEEGDLLATKEATSTVFNLCIVLENKGKVVSAGLIHAATKKIKAGSNVDELLS 354          
The following BLAST results are available for this feature:
BLAST of CK935223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PUB10_ARATH1.378e-3537.59U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB16_ARATH2.599e-3435.71U-box domain-containing protein 16 OS=Arabidopsis ... [more]
PUB4_ARATH1.994e-2640.10U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB3_ARATH2.205e-2539.58U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB2_ARATH8.379e-2538.46U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB9_ARATH2.523e-2129.17U-box domain-containing protein 9 OS=Arabidopsis t... [more]
PUB8_ARATH2.523e-2130.00U-box domain-containing protein 8 OS=Arabidopsis t... [more]
PUB46_ARATH6.019e-1530.77Putative U-box domain-containing protein 46 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_E04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935223 ID=CK935223; Name=CK935223; organism=Citrus sinensis; type=EST; length=856bp
GGGGGCTGATCCGGTGACAGTATCTACCGGCCAGACGTATGATCGATCTT
CGATACAAAAGTGGCTCAAAGCAGGGAATATGCTGTGTCCGAAAACAGGG
GAAAAACTGACAAATACAGAATTGCTTCCGAACACAACTCTCAAGAAGCT
TATCCATCAGTTTTGCGCCGACAATGGCATCTCGCTGGCCAAATCCGGCA
GAAAAAGTCGTGACATAACGAGGACGATTATTCCAGGTAGTCCTGCAGCA
GCAGAGGCGATGAAGCTTATGTCGAGATTTCTTGCAAGGAGACTGTTTTT
CGGAACAAATGAAGAGAAAAACAAGGCAGCCTACGAAATTCGTTTGCTTG
CAAAGTCAAACATTTTCAACAGGTCTTGTATAGTTGAATCAGGCGCAATC
CCGCCTCTCTTGAACCTTTTATTTTCACCAGATCAGTGCGTACAGGAGAA
TGCAGTAGCAGCTTTGCTGAAGCTGTCGAAGCATACTAGTGGCAAGAAAG
TGATAGTTGAAAGCGGGGGACTAAAAGTGATCCTTAAAGTGCTAAAATCC
GGACTGAGCTTGGAAGCAAGGCAGATCGCGGCTGCAACATTGTTTTACCT
TACTTCTGTGAAGGGGTATCGAAAATTGATAGGAGAAACACCGAAGGCAA
TCCCAGCTCTTGTGAAGCTGATTGAAGAGGGCACCGATTGTGGCAAAAAG
AATGCTGTTGTTGCCATTTTCGGGCTGCTTTTGTCTCAAGGAAACCATCA
GAAAGTGCTTGATGCTGGTACCGTTCCATTGCTGGCTGATATTTTAGCTT
CATCAAATAGAACTGAACTAATAACAGATTCGCTAGCAGTTCTTGCAAAT
TTAGCT
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