CK935224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_XMRV3 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 53/181 (29.28%), Postives = 92/181 (50.83%), Query Frame = 3 Query: 138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662 KK++ C QV+YLG+L+ + + +TV+ P P + +++R FL A + R +I GF +A PL LTK G F+W + + A+ ++K AL + L L D ++PF + D G G ++ + +PVA+ S+ L P C + + AI + +G+P ++ Sbjct: 914 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 1091
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVMO (Gag-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pol PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 53/181 (29.28%), Postives = 92/181 (50.83%), Query Frame = 3 Query: 138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662 KK++ C QV+YLG+L+ + + +TV+ P P + +++R FL A + R +I GF +A PL LTK G F+W + + A+ ++K AL + L L D ++PF + D G G ++ + +PVA+ S+ L P C + + AI + +G+P ++ Sbjct: 916 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 1093
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVFF (Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12 Identity = 53/181 (29.28%), Postives = 91/181 (50.28%), Query Frame = 3 Query: 138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662 KK++ C QV+YLG+L+ + + +TV+ P P + +++R FL A + R +I GF +A PL LTK G F W + + A+ ++K AL + L L D ++PF + D G G ++ + +PVA+ S+ L P C + + AI + +G+P ++ Sbjct: 382 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFEWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 559
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVAV (Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12 Identity = 56/182 (30.77%), Postives = 96/182 (52.75%), Query Frame = 3 Query: 138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYL-LGKPFIV 662 KK++ C QV+YLG+L+ + + +TV+ P P + +++R FL A + R +I GF +A PL LTK G F+W + + A+ ++K AL + L L D ++PF + D G G ++ + +PVA+ S+ L P C + M+A + +RK L +G+P ++ Sbjct: 377 KKAQLC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLR-MVAAIAVLRKDAGKLTMGQPLVI 554
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVFP (Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.070e-12 Identity = 53/181 (29.28%), Postives = 91/181 (50.28%), Query Frame = 3 Query: 138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662 KK++ C QV+YLG+L+ + + +TV+ P P + +++R FL A + R +I GF +A PL LTK G F W + + A+ ++K AL + L L D ++PF + D G G ++ + +PVA+ S+ L P C + + AI + +G+P ++ Sbjct: 382 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 559
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVF5 (Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11 Identity = 53/181 (29.28%), Postives = 90/181 (49.72%), Query Frame = 3 Query: 138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662 KK++ C QV+YLG+L+ + + +TV+ P P + +++R FL A R +I GF +A PL LTK G F W + + A+ ++K AL + L L D ++PF + D G G ++ + +PVA+ S+ L P C + + AI + +G+P ++ Sbjct: 382 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGLCRLWIPGFAEMAAPLYP-LTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDVGKLTMGQPLVI 559
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVRD (Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11 Identity = 52/181 (28.73%), Postives = 91/181 (50.28%), Query Frame = 3 Query: 138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662 KK++ C QV+YLG+L+ + + +TV+ P P + +++R FL A + R +I F +A PL L TK G F+W + + A+ ++K AL + L L D ++PF + D G G ++ + +PVA+ S+ L P C + + AI + +G+P ++ Sbjct: 377 KKAQIC--QKQVKYLGYLLREGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPRFAEMAAPLYPL-TKTGTLFNWGPDQQKAYHEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 554 The following BLAST results are available for this feature:
BLAST of CK935224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935224 ID=CK935224; Name=CK935224; organism=Citrus sinensis; type=EST; length=840bpback to top |