CK935239

Overview
NameCK935239
Unique NameCK935239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935239_ssr142 microsatellite CK935239_ssr142:142..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: CYSP4_CARCN (Cysteine proteinase 4 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1
Query:  643 PQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTG 768
            P+S+DWRKKGAVT VKNQ  CG CWAFS +  VEGIN+I TG
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIVTVEGINKIRTG 43          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 54/170 (31.76%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  349 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLN-EFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTG---NLTALSEQELLSC--DTNNFGCEGGL 840
            F +W   + K + + E  L R  IF  N + +   N++     S+ L ++  F+ M++EE++    T LK                      Y N++  P+SVDWR +G VT +++Q  CG C+ F ++AA+EG   I  G   N   LSE+ L+ C  D  N GC GGL
Sbjct:    9 FNTWAANNNKHFTAVEA-LRRRAIFNMNARFVAEFNKK----GSFKLSVDGPFAAMTNEEYR----TLLKSKRTVEENGKVT----------YLNIQ-APESVDWRAQGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGNANTLDLSEEHLVQCTRDNGNNGCNGGL 158          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = 1
Query:  349 FESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLN-EFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTG---NLTALSEQELLSC--DTNNFGCEGGL 840
            F +W+  + K + + E  L R  IF  N + +   NR+     ++ L ++  F+ M++EE+ +  L  LK                      Y N++  P++VDWRKKG VT +++Q  CG C+ F ++AA+EG   I  G       LSE+ ++ C  +  N GC GGL
Sbjct:   16 FNTWVANNNKHFTAVES-LRRRAIFNMNARIVAENNRK----ETFKLSVDGPFAAMTNEEYNS--LLKLKRSGEEKGEVR------------YLNIQ-APKAVDWRKKGKVTPIRDQGNCGSCYTFGSIAALEGRLLIEKGGDSETLDLSEEHMVQCTREDGNNGCNGGL 165          
The following BLAST results are available for this feature:
BLAST of CK935239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CYSP4_CARCN6.155e-1271.43Cysteine proteinase 4 (Fragment) OS=Carica candama... [more]
CPP3_ENTHI1.371e-1131.76Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
CPP1_ENTHI1.371e-1130.59Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_C03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935239 ID=CK935239; Name=CK935239; organism=Citrus sinensis; type=EST; length=850bp
GGGGAGGGAAAGAGTAATAATAAATACTAGAGGCAAGCAGCAGGAAGTTC
CGGCATATCATCACCTACTTTTATATTTTACGTATATAAATAACCCGATC
ATCAAGCGCGCATAGGTAAATTAACTTGAAGATCAAGGGGGGAGAGAGAG
AGAGAGAGAGAGATGAAAATGTTATCTTCCAATTGTAAGTTGTTGCTTCG
TCTTTCTTTGTGCGTGTCTCTCTTGATGATCATATGCATACGCTGCTCTA
GCAGTAGAACTCTTCGAGGTCATGAATATGATGGTGAGTTCTCCATTGTG
GGATATTCACCGGAGGAGTTGACATCCACGGACAAGCTGGTTGAGCTATT
CGAGTCATGGATGTTGAAACATGGGAAATCGTATGAAAGCACGGAAGAGA
AGTTGCATAGATTGGAGATATTCAAAGACAACTTGAAGCACATTGATGCG
AGGAACAGAGAGCTGCAAATTACTAGTAGCTATTGGCTTGGTCTGAATGA
GTTTTCAGATATGAGCCACGAAGAGTTCAAGAACAAGTACTTAACAGGAC
TCAAACCCGATGATGATGAGTTCCGCAGAAGGAGTCACCGCGACTCTAGT
AGCAGTAGTGATCATTTTTTGTATAAAAATGTAGAGGATTTGCCTCAATC
CGTTGACTGGAGGAAGAAAGGAGCTGTTACTCATGTGAAGAACCAAAATC
CTTGTGGTGGATGTTGGGCATTTTCAGCAGTAGCAGCAGTGGAGGGGATA
AATCAGATAGTGACGGGAAATCTAACGGCGTTGTCGGAGCAAGAGTTGCT
TAGCTGCGACACAAATAACTTTGGGTGTGAAGGAGGTCTTTTGTTTTATG
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