CK935242

Overview
NameCK935242
Unique NameCK935242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:  115 YRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            YRGVR+RPWG++AAEIRDP +K TRVWLGTFDT                G+KA  NFP
Sbjct:  138 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195
[Close]
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:  115 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            YRG+R+RPWG++AAEIRDP K  RVWLGTF T                G KAK NFP
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106
The following BLAST results are available for this feature:
BLAST of CK935242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERF5_NICSY7.008e-1156.90Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF71_ARATH9.153e-1154.39Ethylene-responsive transcription factor ERF071 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_C06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935242 ID=CK935242; Name=CK935242; organism=Citrus sinensis; type=EST; length=864bp
GGGGCTTCAAGAGCTCACTAACAACTTGCTCCTCTGTTCAAAATGNNNNC
GAGAGATAAGCTCAACAAACCATCCTCTAACCCGAATCCGAATTCGAAGG
ATATGGAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGTTAC
GCCGCCGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGGCAC
CTTCGACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGCGTG
AGTTCCGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAAATC
CTTGGCACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTCATC
CTCTCCTCCTCCGCCGACGCTGCTGCCACAGCCACAGCCGCTGCCACAGC
TAAACCTAGCTCTCAACAGCTACCGTAATGCCGGCGCGTGCCTCCCAGTC
GCCACGGCGCGTCCGGTCCTTTTCTTCGACGTTTTCTCCTCCGGTGGTAC
TGTTGCGACTCACCGTGATGCACGCTGTGTTGGTTTTTATCCCGGCGGGA
CCCAGAGCGACTCCGATTCGTCATCGGTCGTCGTTGATTACGATCCTCGT
TCGTCTGAGAGAAGATTGATTGATCTTGATCTTGATCTTAATCTCCCTCC
TCCACCTGAAGTGGCTTGAGTTTTTGGACTGAAGCTAATGCTGACGTGTA
CGGCGATGGTGATGTGTATATAGTGACCCTAGCAAGATCCTTTGGTCGAT
CTTCGTATTTTTGTTTTTGCAACTGGAAAATCTAGGACGGTTACTCCACG
TTGTTTTTAACTGCTGCCGTTAGAAATATATATATATATGTGTTTAATGC
TTAGTCAAATGATA
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