CK935259

Overview
NameCK935259
Unique NameCK935259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SYNS9 (5'-nucleotidase surE OS=Synechococcus sp. (strain CC9902) GN=surE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.566e-23
Identity = 67/180 (37.22%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD---FDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 648
            I+++NDDG+ A G+R+L     +       VC PD E+SA  H +T + PI A  AD     GVTA+A SGTPADC  L + + L    PDLV+SGIN G N G  V  SGTVA A E    G+ S+++S   + W         +  AA+  + +    +    +  +PE   LN+++P
Sbjct:    6 ILISNDDGVFADGIRTLAAAAAARGHEVTVVC-PDQERSATGHGLTLQSPIRAERADELFAPGVTAWACSGTPADCMKLALFE-LVKHKPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGIRSLAVSSACFQW-------RQFQAAADLAMDVSEQAI----HGNWPENMLLNLNIP 172          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SYNP2 (5'-nucleotidase surE OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=surE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.566e-23
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE-----IRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQG 693
            ++++NDDGI A G+R+L   L         VC PD E+SA  H +T   PI     +  FD  VTA++ SGTP+DC    +S A+    PD V+SGIN GSN G  V+YSGTV+ A E    G+ S+++S          +++  AA+  + ++  ++ +     I NQ  P    LNI++P  +     G K+T+QG
Sbjct:    9 LLISNDDGISALGIRTLANTLAEAGHQVTVVC-PDRERSATGHGLTLHRPIRTEIVEGIFDPRVTAWSCSGTPSDCVKFALS-AVLKERPDFVLSGINHGSNLGTDVLYSGTVSAAMEGLLEGIHSIALSL----ADYTSHNFQPAADFAVKLLCQLMEKRPHWAIANQDAP--VLLNINVPNLEKEKLAGVKITRQG 198          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SYNJA (5'-nucleotidase surE OS=Synechococcus sp. (strain JA-3-3Ab) GN=surE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.566e-23
Identity = 68/206 (33.01%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG----VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTK-QGTSIFKMGWRRVT 729
            I+++NDDGI A G+R L   L     + + V  PD E+SA  H++T   P+   P   +G    V A+A SGTP+DC  LG+   L    PD VI+GIN G+N G  V+YSGTV+ A E    G+PS+++S           D+  AA+    ++  +L ++  +   +   LN+++P          L + +G  + ++ WR+ T
Sbjct:    3 ILISNDDGIQAAGVRCLAAALAQVGGHQITVVCPDRERSATGHALTLHKPLRVDPVR-EGFPPEVQAWACSGTPSDCVKLGLD-GLLQQPPDWVIAGINQGANLGTDVLYSGTVSAAMEGLLEGIPSLAVSL----ASFTHQDFQPAAQ----VVLMLLEKLSLKPLEKPMLLNVNVPP-------LGLAEIRGMVLARLAWRKYT 191          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SILST (5'-nucleotidase surE OS=Silicibacter sp. (strain TM1040) GN=surE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.566e-23
Identity = 74/239 (30.96%), Postives = 116/239 (48.54%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVL--VSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS-YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFKMGWRRVTSE-----------MQGGKMLSTMTMDTDSAVTIE 798
            I+VTNDDGI APGL  L ++   ++     V + AP  E+S V H I++ HP         G   +A  G+PADC    +   +  + PDL++SG+N G+N   + +YSGT+ GA E    GVP++++S Y   G +   N +  A      ++  +L+       P R F NI+ P     + KG K+T QG    + G R    E           ++GG    +   +TD+A  ++
Sbjct:    3 ILVTNDDGISAPGLAVLEQIATELAGPEGEVWIVAPAFEQSGVGHCISYTHPSILSEL---GPRRFAAEGSPADCVLAALHVVMKDTPPDLILSGVNRGNNSAENALYSGTLGGAMEGALQGVPAMALSQYYGSGNRDLENPFEAARAHGAEVVRKLLSATPQNDSPYRLFYNINFPPVAAGDVKGIKVTTQGC---RSGKRFSAEEQFSPNGKRFIWVKGGDQQVSTAPETDAAANLD 235          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PROMP (5'-nucleotidase surE OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=surE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.566e-23
Identity = 66/180 (36.67%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI---SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 648
            I+++NDDG+ A G+R+L +  +        VC PD E+SA  H +T + P+    AD  FD G+ A+  SGTPADC  L +S+ L    PDLV+SGIN G N G  +  SGTVA A E     VPS++I   S+ W        ++  A E  + I    + +    ++P+   LN+++P
Sbjct:    6 ILISNDDGVFAEGIRALAKSALKKGHKVTVVC-PDQERSATGHGLTLQSPLRVERADELFDKGIKAWGCSGTPADCVKLALSE-LLDKKPDLVLSGINHGPNLGTDIFCSGTVAAAMEGTLENVPSMAISVASFKW-------KNFEFAGEIAMNIAEQAIKD----SWPKSLLLNLNIP 172          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_HELPJ (5'-nucleotidase surE OS=Helicobacter pylori J99 GN=surE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.566e-23
Identity = 75/199 (37.69%), Postives = 107/199 (53.77%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVS-GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYT-LAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 708
            I++TNDDG  A G+++L + L   N   + V AP  EKSA S  IT   P+ A          Y +  GTP+DC  L +++       DLVISGIN+GSN G   +YSGTVAGA E    GVPS++IS       SN N  T L+ +    II  ++  +  + YP   R  LN+++P   +   KG ++T +G  ++K
Sbjct:    4 ILLTNDDGYHAKGIKALEQAL--ENMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQI----LSNKNKNTPLSFDLAQKIIQDLVQNVFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYK 196          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_DESMR (5'-nucleotidase surE OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=surE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.566e-23
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 513
            I++TNDDGI A G+R L + L+    + V V AP SE+SAV H+IT   P+  +    +G     VSGTPADC  L ++  L    PDLV+SGIN G+N G  ++YSGTV+ A E    G P+V++S D
Sbjct:    3 ILLTNDDGIQAVGIRHLYKGLIDAG-HDVLVAAPISEQSAVGHAITIASPLRVKEFVENGFRGLGVSGTPADCVKLALT-TLMQDKPDLVVSGINAGANVGVDILYSGTVSAATEGALMGYPAVAVSAD 129          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_XANC5 (5'-nucleotidase surE OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=surE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.270e-23
Identity = 69/193 (35.75%), Postives = 107/193 (55.44%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP----TDIPNNKGYKLTKQG 693
            ++V+NDDG+DAPG++ L   L     + V V APD ++S  S+S+T   PI  R  D       AV+GTP DC  L ++  +    PD+V+SGIN  +N G  V+YSGTV+ A E  F G+P+V++S   V      + Y  AA A + I+    A ++    P    LN+++P    +D+    G+++T+ G
Sbjct:    3 VLVSNDDGVDAPGIQILAEALRHAG-HEVMVVAPDRDRSGASNSLTLDVPIRTRRVD---AQTCAVAGTPTDCVHLALT-GMLDYDPDIVVSGINNSANLGDDVIYSGTVSAAMEGRFLGLPAVAVSL--VTHNHQAHHYDTAARAAVEIV----ARLKADPLPADTILNVNVPDLAWSDV---LGFEVTRLG 181          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_RHOPS (5'-nucleotidase surE OS=Rhodopseudomonas palustris (strain BisB5) GN=surE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.270e-23
Identity = 74/207 (35.75%), Postives = 105/207 (50.72%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFKMGWRRVTSEMQG 744
            I+ TNDDGI APGL+ +V  +       V V AP+ ++S VSHS++   P+  R     G   +AV GTP DC  +G    L    PDLV+SG+N G N    VVYSGT+AGA E    G+PS ++S ++     N   +   A+A  P    IL +      P+   +NI+ P   P+   G  +T+QG      G+ R+     G
Sbjct:    3 ILCTNDDGIHAPGLK-VVEEIARALSDDVWVVAPELDQSGVSHSLSLNDPLRLREV---GPRHFAVRGTPTDCVIMGARHILADKAPDLVLSGVNRGRNVAEDVVYSGTIAGALEGTILGLPSFALSQEFTLETRNAPLWD-TAKAHGP---EILRKAIKAGVPKNTVININFPACAPDEVAGVMVTRQGKR--NQGFLRIDERHDG 199          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PROMS (5'-nucleotidase surE OS=Prochlorococcus marinus (strain AS9601) GN=surE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.270e-23
Identity = 64/180 (35.56%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF---DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI---SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 648
            I+++NDDG+ A G+R+L +       + V+V  PD E+SA  H +T + P+    AD    +G+ A+  SGTPADC  L +S+ L  + PDL++SGIN G N G  +  SGTVA A E     VPS++I   S+ W        ++  A E  + I    +    N ++P    LN+++P
Sbjct:    6 ILISNDDGVFAAGIRALAKS-AQKRGHKVKVVCPDQERSATGHGLTLQSPLRVEKADELFGEGIEAWGCSGTPADCVKLALSE-LLDNKPDLILSGINHGPNLGTDIFCSGTVAAAMEGTLENVPSMAISVASFKW-------KNFEAAGEIAMNIAEQAI----NDSWPASLLLNLNIP 172          
The following BLAST results are available for this feature:
BLAST of CK935259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_SYNS95.566e-2337.225'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_SYNP25.566e-2335.865'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_SYNJA5.566e-2333.015'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_SILST5.566e-2330.965'-nucleotidase surE OS=Silicibacter sp. (strain T... [more]
SURE_PROMP5.566e-2336.675'-nucleotidase surE OS=Prochlorococcus marinus su... [more]
SURE_HELPJ5.566e-2337.695'-nucleotidase surE OS=Helicobacter pylori J99 GN... [more]
SURE_DESMR5.566e-2345.745'-nucleotidase surE OS=Desulfovibrio magneticus (... [more]
SURE_XANC57.270e-2335.755'-nucleotidase surE OS=Xanthomonas campestris pv.... [more]
SURE_RHOPS7.270e-2335.755'-nucleotidase surE OS=Rhodopseudomonas palustris... [more]
SURE_PROMS7.270e-2335.565'-nucleotidase surE OS=Prochlorococcus marinus (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_H04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935259 ID=CK935259; Name=CK935259; organism=Citrus sinensis; type=EST; length=815bp
GGGAAACGCACGACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTGGA
CCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTA
TTGTTAACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGG
ATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAA
TCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTA
GTCATAGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTT
GATGGAGTTACAGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATC
GTTGGGTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCA
GTGGCATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGG
ACAGTTGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTC
TATATCATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACAC
TCGCTGCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATC
AGGAATCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTAC
AGATATTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCA
TATTCAAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAG
ATGTTATCAACAATGACAATGGACACAGATTCAGCAGTTACAATTGAAAC
AGATACATCTACCCC
back to top