CK935259

Overview
NameCK935259
Unique NameCK935259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935259_ssr28 microsatellite CK935259_ssr28:28..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12009 contig Csv1_Contig12009:60..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CLOB8 (5'-nucleotidase surE OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=surE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.354e-27
Identity = 75/209 (35.89%), Postives = 121/209 (57.89%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVT--AYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQGTSIFKMGWRRVTSEMQG 744
            I++TNDDGI+APG+ +L + +  +  + V + AP  +KSA SHSI+   PI  +    +G+   AY+VSGTPADC  +G+S        +LVISGIN G N G  ++YSGTV+ A E   +G+PS+++S D   GK +  DY+ A +  + +++      + +       LN+++P  +  + KG K+ K G S +K  +  + S  +G
Sbjct:    3 ILITNDDGINAPGIIALAKEI--SKEHKVTIVAPKDQKSASSHSISIHSPIKIKEEFIEGLDCKAYSVSGTPADCTQVGLS--FLKENIELVISGINKGPNVGTDILYSGTVSAAIEGTIYGIPSIAVSMDVEYGKDD-EDYSKAVKWAIKVLDI----AKEEYLKSDVVLNLNIPNFNERDIKGIKVCKIGRSTYKTEYILLESNEEG 202          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SYMTH (5'-nucleotidase surE OS=Symbiobacterium thermophilum GN=surE PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.298e-27
Identity = 77/203 (37.93%), Postives = 112/203 (55.17%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTA--YAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFKMGWRR 723
            +++TNDDGI APG+ +L   +       V   APD E+SA  H+IT   P+     +  G  A   +V+GTPAD A L + +A+ P  PDLVISGIN G+N G  + YSGTVA A E    G+P++++S D        +DY+ AA+    +   +L E      PE   LN+++P  +P    KG ++TK G  I++  W R
Sbjct:    4 VLLTNDDGIFAPGINALRARMEQIPGLEVWAVAPDRERSASGHAITTYRPLFPVRVEIPGAVAPCISVTGTPADSAKLAI-EAILPRRPDLVISGINRGANLGTDIFYSGTVAAALEGPILGIPALAVSLD----SMTSSDYSAAADFAAQLALKVLEE----GLPEGTLLNVNVPA-LPREAIKGVRVTKVGRRIYRDQWVR 196          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_GEOMG (5'-nucleotidase surE OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=surE PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.298e-27
Identity = 79/194 (40.72%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA---RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQG 693
            I+VTNDDG+ APG+RSL   L   N   V V APD E+SAV H++T  HP+ A   RPA F      AV GTP DC +LG+   L  S PD+V+SG+N G N G  + YSGTV+ A EA   G+P++++S    G   N   Y +A+     ++      +  +  P    LN+++P D+P  K  G  +T QG
Sbjct:    3 ILVTNDDGVRAPGIRSLAEAL--RNIGDVVVVAPDRERSAVGHALTLHHPLRASEIRPAVF------AVDGTPTDCVNLGI-HTLLGSRPDIVVSGVNCGGNMGDDITYSGTVSAAMEATLMGIPALAVSLATSGRGDN---YAVASAFAARLVRI----VSERGLPPDTLLNVNVP-DLPLEKLGGAVVTIQG 179          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_GEOSL (5'-nucleotidase surE OS=Geobacter sulfurreducens GN=surE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.849e-26
Identity = 75/191 (39.27%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQG 693
            I+VTNDDG+ APG+ +L   L      TV V APD E+SAV H++T  HP+        G+  +AV GTP DC +LG+   L    PD+V+SG+N G N G  + YSGTV+ A EA   G+P++++S    G  SN   Y  AA     +      E+ ++  P   FLN+++P D+P  +  G  +T QG
Sbjct:    3 ILVTNDDGVHAPGIVALAEALRLVG--TVTVVAPDRERSAVGHALTLHHPLRVTEI-MAGI--FAVDGTPTDCVNLGI-HTLLAEAPDIVVSGVNRGGNLGDDITYSGTVSAALEATLMGIPAIAVSLATNGHGSN---YRAAAAFAAQLAR----EVLDRGLPRDTFLNVNVP-DLPAEELGGPVITSQG 179          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PELTS (5'-nucleotidase surE OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=surE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 71/194 (36.60%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGV--TAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI---SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQG 693
            I+++NDDGI A G+ +L   L   N   + + APD E+SA  H IT   P+  +   +       +AV GTPADC  LG+ +AL P+ PDLVISGIN+G N G  V+YSGTV+ A E   +G+P++++   SYD+        D++ + +    +++A          P++  LNI++P   P   G K+T+ G
Sbjct:    3 ILISNDDGIQAEGINALRACLQEQNE--IYIVAPDRERSATGHKITMHRPLRVKEWHYPEAKTVGWAVDGTPADCVKLGL-EALLPAPPDLVISGINLGPNLGTDVLYSGTVSAAIEGIINGIPAIAVSLASYDY-------RDFSFSGKLIKELVSAF-----GNRLPDKTLLNINVPPGKP--CGIKVTRLG 179          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_NATTJ (5'-nucleotidase surE OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=surE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 74/197 (37.56%), Postives = 111/197 (56.35%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG----VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            +++TNDDGI APG+ ++ + + S + +   V APD E+SA  H+IT   P+        G    +  Y+V+GTP+DC  L V +++    PDLVISGIN G+N G  V+YSGTV+GA EA    + S+++S   YD+        DY+ AA     I N I  +   + +     LN+++P    N  KG K+T+QG
Sbjct:    3 VLLTNDDGIYAPGIFAMAKEIASRDEFEAVVVAPDREQSATGHAITVHKPLRVNNVKKLGEKLEIPFYSVNGTPSDCVKLAV-ESVMDEKPDLVISGINRGANLGTDVLYSGTVSGAMEAAILNIKSIAVSLVDYDY-------EDYSTAASYTAYIANII--KDNPEEFENGTLLNVNVPAVEANQLKGVKITRQG 189          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_DESHY (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain Y51) GN=surE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 78/196 (39.80%), Postives = 108/196 (55.10%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 708
            I++TNDDG  APGL++L   L     Y V + APDS+KSA  HSIT   P+       D  T YAVSG PADC  L +  ++ P  PDLVISGIN G N G  V YSGTV+ A E    GVP++++S        +  DY  AA+     +   L ++R         +NI++P  +P    KG ++TK G ++++
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSIIPK-PDLVISGINNGPNLGTDVFYSGTVSAAMEGVLLGVPAIAVSL----ASFSAVDYKPAAQ----FVALSLPKLRLGP----GLININIP-PLPEKEWKGVRVTKLGKAVYE 183          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_DESHD (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=surE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 78/196 (39.80%), Postives = 108/196 (55.10%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 708
            I++TNDDG  APGL++L   L     Y V + APDS+KSA  HSIT   P+       D  T YAVSG PADC  L +  ++ P  PDLVISGIN G N G  V YSGTV+ A E    GVP++++S        +  DY  AA+     +   L ++R         +NI++P  +P    KG ++TK G ++++
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSIIPK-PDLVISGINNGPNLGTDVFYSGTVSAAMEGVLLGVPAIAVSL----ASFSAVDYKPAAQ----FVALSLPKLRLGP----GLININIP-PLPEKEWKGVRVTKLGKAVYE 183          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_DESAP (5'-nucleotidase surE OS=Desulforudis audaxviator (strain MP104C) GN=surE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 81/191 (42.41%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPA-DFDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQG 693
            I++TNDDGI APGL +L R  +S    T+ + APD E+SA  HSIT   PI  R A   DG    + V GTPADC  L + ++L P  PDLVISGIN+G N G  V+YSGTV+ A E   +GVPS++IS      ++   +    A   LP++     E R + +     LNI++P   P   G +LT+ G
Sbjct:    3 ILLTNDDGIFAPGLEAL-RNALSDLAETIYIIAPDRERSATGHSITVHRPIRVREACHADGNCCGWIVDGTPADCVKLAL-ESLLPETPDLVISGINLGPNLGTDVLYSGTVSAAMEGLINGVPSLAISLA-SHREAEFEEAAAFARRLLPLV----FEYR-EIFTANTLLNINVPPGKP--VGVRLTRLG 183          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_FERNB (5'-nucleotidase surE OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=surE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 83/195 (42.56%), Postives = 109/195 (55.90%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLGVSQALFPS--VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVND--YTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQ 690
            I++ NDDG+ APG+    R L  +  + V V AP+SE+SAV H IT R P+ AR  D  +    YAVSGTPADC  +G+         +PD+VISGIN G N G  VVYSGTV+GA E    GVPS++IS       ++  D  Y   A   L      L E   +  P    LNI++P+ +P    KG+KLT+Q
Sbjct:    3 ILLVNDDGVTAPGILCAARYL--SKEHYVVVSAPESEQSAVGHGITLRFPLWARKLDINEPFEMYAVSGTPADCVKIGLDVIYKDKGIMPDVVISGINRGENLGTDVVYSGTVSGALEGAIAGVPSIAISV------ADFKDPIYETGARFLL----NFLKEFDVKRIPRFTALNINVPS-VPYEQIKGWKLTRQ 184          
The following BLAST results are available for this feature:
BLAST of CK935259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_CLOB86.354e-2735.895'-nucleotidase surE OS=Clostridium beijerinckii (... [more]
SURE_SYMTH8.298e-2737.935'-nucleotidase surE OS=Symbiobacterium thermophil... [more]
SURE_GEOMG8.298e-2740.725'-nucleotidase surE OS=Geobacter metallireducens ... [more]
SURE_GEOSL1.849e-2639.275'-nucleotidase surE OS=Geobacter sulfurreducens G... [more]
SURE_PELTS2.414e-2636.605'-nucleotidase surE OS=Pelotomaculum thermopropio... [more]
SURE_NATTJ2.414e-2637.565'-nucleotidase surE OS=Natranaerobius thermophilu... [more]
SURE_DESHY2.414e-2639.805'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_DESHD2.414e-2639.805'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_DESAP2.414e-2642.415'-nucleotidase surE OS=Desulforudis audaxviator (... [more]
SURE_FERNB3.153e-2642.565'-nucleotidase surE OS=Fervidobacterium nodosum (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_H04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935259 ID=CK935259; Name=CK935259; organism=Citrus sinensis; type=EST; length=815bp
GGGAAACGCACGACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTGGA
CCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTA
TTGTTAACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGG
ATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAA
TCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTA
GTCATAGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTT
GATGGAGTTACAGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATC
GTTGGGTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCA
GTGGCATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGG
ACAGTTGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTC
TATATCATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACAC
TCGCTGCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATC
AGGAATCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTAC
AGATATTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCA
TATTCAAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAG
ATGTTATCAACAATGACAATGGACACAGATTCAGCAGTTACAATTGAAAC
AGATACATCTACCCC
back to top