CK935259

Overview
NameCK935259
Unique NameCK935259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_NEIMF (5'-nucleotidase surE OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=surE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 66/191 (34.55%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVP-DLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            ++++NDDG  + G+  L RV  +     V+V AP+ ++S VS+S+T   P+  + A  +G   Y V+GTP DC  +G  Q++F     D V SGIN G+N G   +YSGTVA A EA+  G+P+V+ S +   G+     Y   AE  L     +LA             NI++P   P + +G K+ + G
Sbjct:    3 VLISNDDGYLSEGIAVLARV--TAEFANVRVVAPERDRSGVSNSLTLERPLQLKQAQ-NGF--YYVNGTPTDCIHIG--QSVFSDFQADFVFSGINRGANMGDDTLYSGTVAAATEAYLMGIPAVAFSLNDASGR-----YWATAEKAL---WTLLAHFFKNPPQSPILWNINIPAVEPEDVRGIKIARLG 178          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_NEIMA (5'-nucleotidase surE OS=Neisseria meningitidis serogroup A GN=surE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 66/191 (34.55%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVP-DLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            ++++NDDG  + G+  L RV  +     V+V AP+ ++S VS+S+T   P+  + A  +G   Y V+GTP DC  +G  Q++F     D V SGIN G+N G   +YSGTVA A EA+  G+P+V+ S +   G+     Y   AE  L     +LA             NI++P   P + +G K+ + G
Sbjct:    3 VLISNDDGYLSEGIAVLARV--TAEFANVRVVAPERDRSGVSNSLTLERPLQLKQAQ-NGF--YYVNGTPTDCIHIG--QSVFSDFQADFVFSGINRGANMGDDTLYSGTVAAATEAYLMGMPAVAFSLNDASGR-----YWATAEQAL---WTLLAHFFKNPPQSPILWNINIPAVAPEDVRGIKIARLG 178          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_LEPCP (5'-nucleotidase surE OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=surE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 64/175 (36.57%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT 651
            I+V NDDG  APGL +LV V        V+V AP+   S  S+++T   P+S   A  +G     V+GTP+DC  + ++  L    PDLV+SGIN G+N G   +YSGTVA A E +  GVP+++ S     G S+++  T AA   L  +      + +  + E   LN+++P+
Sbjct:    3 ILVANDDGYLAPGLAALVAVCKEFG--DVEVVAPEQNASGTSNALTLTRPLSVHTAA-NGFRY--VNGTPSDCVHVALT-GLLAQRPDLVVSGINNGANMGDDTIYSGTVAAAMEGYLFGVPAIAFSL-VDKGWSHLDAATRAARGVLAHV------LASGWHREHWLLNVNIPS 164          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CHLTB (5'-nucleotidase surE OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=surE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVT--AYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 507
            I++TNDDGI A G+  L+ +L   +   + V AP  E+S  S + +   P +  P D+      A+AV+GTP DC  L + +    +  DL++SGIN G N G  + YS TV   REA  HG+P++++S
Sbjct:    9 ILITNDDGIKAKGISLLISLLREADFADLYVVAPLEEQSGRSMAFSLVEPTALEPFDYPQRVQEAWAVTGTPVDCVKLAIGELFKENALDLILSGINNGKNSGRCLYYSATVGAIREANLHGIPAIALS 137          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CHLTA (5'-nucleotidase surE OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=surE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 62/193 (32.12%), Postives = 97/193 (50.26%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVT--AYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP--TDIPNNKGYKLTKQG 693
            I++TNDDGI A G+  L+ +L   +   + + AP  E+S  S + +   P +  P D+      A+AV+GTP DC  L + +    +  DL++SGIN G N G  + YS TV   REA  HG+P++++S        N+  +  A  A L  I ++        + +   LN++ P  TD    KG + T  G
Sbjct:    9 ILITNDDGIKAKGISLLISLLREADFADLYIVAPLEEQSGRSMAFSLVEPTTLEPFDYPQRVQEAWAVTGTPVDCVKLAIGELFKENALDLILSGINNGKNSGRCLYYSATVGAIREANLHGIPAIALSQ-----SENIAFFQEAHMASL--IRSLCEFTVAYKHTDPLGLNVNFPASTDDSPWKGIRFTLSG 194          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CHLT2 (5'-nucleotidase surE OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=surE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVT--AYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 507
            I++TNDDGI A G+  L+ +L   +   + V AP  E+S  S + +   P +  P D+      A+AV+GTP DC  L + +    +  DL++SGIN G N G  + YS TV   REA  HG+P++++S
Sbjct:    9 ILITNDDGIKAKGISLLISLLREADFADLYVVAPLEEQSGRSMAFSLVEPTALEPFDYPQRVQEAWAVTGTPVDCVKLAIGELFKENALDLILSGINNGKNSGRCLYYSATVGAIREANLHGIPAIALS 137          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PSESM (5'-nucleotidase surE OS=Pseudomonas syringae pv. tomato GN=surE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 66/191 (34.55%), Postives = 100/191 (52.36%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQ-TYPERCFLNIDLPT-DIPNNKGYKLTKQG 693
            I+++NDDG+++PGL +L   L       V   APD +KS  S S+T   P+  +      ++   ++GTP DC  LG+   L    P++V+SGIN+G+N G  V+YSGTVA A E  F   PS + S+     +   N  T A  A       +L E   Q   P R  LN+++P   + + +G +LT+ G
Sbjct:    3 ILISNDDGVNSPGLAALYAALADYTECVV--IAPDQDKSGASSSLTLDRPLHPQTLANGFIS---LNGTPTDCVHLGI-HGLLEREPEMVVSGINLGANLGDDVLYSGTVAAALEGRFLQRPSFAFSF---LSRQPDNLATAAHYA------RLLVEAHEQFDLPPRTVLNVNIPNLPLEHIRGIQLTRLG 178          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PELLD (5'-nucleotidase surE OS=Pelodictyon luteolum (strain DSM 273) GN=surE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 66/199 (33.17%), Postives = 99/199 (49.75%), Query Frame = 1
Query:  112 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIP--NNKGYKLTKQGTS 699
            D +P I+V NDDGI+  G+  L   +      TV   AP    S +SH++T   P+  R    +     + VSGTP DC  + +S  +    PDL++SGIN GSN     +YSGTVA A E    GV S++ S           D+T A +    +   +L E      PE   L++++P ++P  + +G ++T QG S
Sbjct:    5 DRRPEILVCNDDGIEGEGIHVLAASMKKLGNVTV--VAPAEPHSGMSHAMTLGVPLRIREFRRNNRFFGHTVSGTPVDCIKVALSH-IMKVKPDLIVSGINYGSNTAMSTLYSGTVAAALEGAIQGVTSLAFSLT----TYEHADFTYAGKFARKLARKVLQE----GLPEDTILSVNIP-NVPEADIQGVRITGQGRS 191          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_METPP (5'-nucleotidase surE OS=Methylibium petroleiphilum (strain PM1) GN=surE PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 66/192 (34.38%), Postives = 98/192 (51.04%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYA-VSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIP--NNKGYKLTKQG 693
            I+V NDDG  APGL +LV          + V AP+   S  S+++T + P+S   A       Y  ++GTP+DC  + ++  L P  PDLV+SGIN G+N G   +YSGTVA A E +  G+PS++ S    G          AA     +I  ++A       P    LN+++P D P  + +G + T+ G
Sbjct:    3 ILVANDDGYLAPGLAALVEACRGLGE--LDVVAPEQNSSGTSNALTLQRPLSVWTA----ANGYRYLNGTPSDCVHVALT-GLLPQRPDLVVSGINNGANMGDDTLYSGTVAAAMEGYLFGIPSIAFSLSEKGW----THLDTAARVARRLIEQVIA---LPPVPGAWLLNVNIP-DRPYEDLRGLRTTRLG 179          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_METBU (5'-nucleotidase surE OS=Methanococcoides burtonii (strain DSM 6242) GN=surE PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 58/201 (28.86%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYH-VVYSGTVAGAREAFFHGVPSVSISYDWV--GGK-SNVNDYTLAAEACLPIINAILAEIRNQTYPERC-FLNIDLPTDIPNNKGYKLTKQGTSIFKMG 714
            I++TNDDG+ A G+R+  R +      TV   AP  ++S V  SI+   P+       DG+  +A+ GTP D   LG+   +   +PDL++SG N+G N     +  SGT+  A E   +GVP+++ S      G K  ++ D+    +  +  +N +  ++     PE    LNI++P  +  +   ++T+     F+ G
Sbjct:    5 ILLTNDDGVYAAGIRAAYRSVSDLGDVTVS--APAQQQSGVGRSISIFEPLRITRTTIDGIEVHAIGGTPTDSVILGIF-TIMKELPDLILSGFNIGENISTDTITTSGTIGAALEGASYGVPAIAASLQVTEEGLKFDDLRDFQHDFDVGIKFVNGVAKKVLKNGLPENVDLLNINIPHFVEEDSEVEITRLARKFFRTG 202          
The following BLAST results are available for this feature:
BLAST of CK935259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_NEIMF2.420e-1834.555'-nucleotidase surE OS=Neisseria meningitidis ser... [more]
SURE_NEIMA2.420e-1834.555'-nucleotidase surE OS=Neisseria meningitidis ser... [more]
SURE_LEPCP2.420e-1836.575'-nucleotidase surE OS=Leptothrix cholodnii (stra... [more]
SURE_CHLTB2.420e-1837.985'-nucleotidase surE OS=Chlamydia trachomatis (str... [more]
SURE_CHLTA2.420e-1832.125'-nucleotidase surE OS=Chlamydia trachomatis (str... [more]
SURE_CHLT22.420e-1837.985'-nucleotidase surE OS=Chlamydia trachomatis (str... [more]
SURE_PSESM3.161e-1834.555'-nucleotidase surE OS=Pseudomonas syringae pv. t... [more]
SURE_PELLD3.161e-1833.175'-nucleotidase surE OS=Pelodictyon luteolum (stra... [more]
SURE_METPP3.161e-1834.385'-nucleotidase surE OS=Methylibium petroleiphilum... [more]
SURE_METBU3.161e-1828.865'-nucleotidase surE OS=Methanococcoides burtonii ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_H04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935259 ID=CK935259; Name=CK935259; organism=Citrus sinensis; type=EST; length=815bp
GGGAAACGCACGACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTGGA
CCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTA
TTGTTAACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGG
ATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAA
TCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTA
GTCATAGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTT
GATGGAGTTACAGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATC
GTTGGGTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCA
GTGGCATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGG
ACAGTTGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTC
TATATCATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACAC
TCGCTGCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATC
AGGAATCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTAC
AGATATTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCA
TATTCAAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAG
ATGTTATCAACAATGACAATGGACACAGATTCAGCAGTTACAATTGAAAC
AGATACATCTACCCC
back to top