CK935259

Overview
NameCK935259
Unique NameCK935259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_RHORT (5'-nucleotidase surE OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=surE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 68/199 (34.17%), Postives = 103/199 (51.76%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW-VGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFKMG 714
            I+++NDDG +A GL  L RV   T    V + AP++E+S   H++T   P+  R     G   ++V GTP DC  + V+  L    PDLV+SGIN G N G  V YSGTVA A E    G+ ++++S  +   G    + + +AA     +I  +     N+    +  +N++ P D P +   G +L +QG    KMG
Sbjct:   13 ILLSNDDGFEAEGLAVLERV-ARTLSDDVWIVAPETEQSGAGHALTIHDPLRFRAR---GEKRFSVRGTPTDCVLVAVNH-LMDRPPDLVVSGINRGGNLGEDVHYSGTVAAAMEGTLLGLRAIALSQVFETNGTGIADPFQVAATHASDVIRRVCGRPWNR----QVLINVNFP-DCPLDAVTGIELKRQGRR--KMG 199          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PSEF5 (5'-nucleotidase surE OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=surE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 65/191 (34.03%), Postives = 100/191 (52.36%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI-LAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQG 693
            I+++NDDG+ APG+ +L   L       V   APD +KS  S S+T   P+        G    +++GTP DC  LG++  L    PD+V+SGIN+G+N G  V+YSGTVA A E  F   P+++ S         V +   AA     ++ A  L ++     P R  LN+++P   + + +G +LT+ G
Sbjct:    3 ILISNDDGVTAPGIAALHAALADYAECVV--IAPDQDKSGASSSLTLDRPLHPHTL---GNGFISINGTPTDCVHLGLN-GLLEHDPDMVVSGINLGANLGDDVLYSGTVAAALEGRFLQRPAIAFSL----VSRQVENLATAAYFARKLVQAQGLLDL-----PPRTVLNVNIPNLPLDHIRGIQLTRLG 178          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_METM7 (5'-nucleotidase surE OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=surE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 65/204 (31.86%), Postives = 99/204 (48.53%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD-------WVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERC-FLNIDLPTDIPNNKGYKLTKQGTSIFKM 711
            I++ NDDGI + GL +L  V+       V V AP +++S +  +I+   P+        D    YAVSGTP DC  LG+ Q L   VPD VISGIN+G N G  +  SGT+  A E   HG  +++ S         +  G+S +   T A      I+  +  +     +P  C  +NI++P +   N   ++TK    ++ M
Sbjct:    5 ILLVNDDGIYSNGLLALKNVIGEEFDANVTVVAPTNQQSGIGRAISLFEPLRITKTKLADCSEGYAVSGTPTDCVVLGIHQVL-KKVPDYVISGINIGENLGTEITTSGTLGAAFEGAHHGAKALACSLQVTMDHLKFKEGESPIEFLTTAR-----IVKNVFKKFLGDEFP--CDVVNINVPDNATENTPVEITKLAKRMYSM 200          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_LEPBP (5'-nucleotidase surE OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=surE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVND-YTLAAEACLPIINAILAEIRN 606
            +++TNDDGI + G+++L RVL  +  Y   + AP  E+S  S ++T    +     + +    Y   G P DC ++G+   +FP + D VISGIN G N GY V YSGTV  A+    HG+PS+++S     G+ +  D Y   AE  L  +    ++I++
Sbjct:    3 LLITNDDGISSAGIKALERVLGKS--YNTYLIAPLKERSVTSMALTVFQGMRVERINDNH---YIADGFPVDCVNIGLYAEIFPKI-DFVISGINRGVNMGYDVHYSGTVGAAKHGALHGIPSLAVS----SGRIDPEDGYEKEAELVLAFLEQYKSQIQS 153          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_LEPBA (5'-nucleotidase surE OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=surE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVND-YTLAAEACLPIINAILAEIRN 606
            +++TNDDGI + G+++L RVL  +  Y   + AP  E+S  S ++T    +     + +    Y   G P DC ++G+   +FP + D VISGIN G N GY V YSGTV  A+    HG+PS+++S     G+ +  D Y   AE  L  +    ++I++
Sbjct:    3 LLITNDDGISSAGIKALERVLGKS--YNTYLIAPLKERSVTSMALTVFQGMRVERINDNH---YIADGFPVDCVNIGLYAEIFPKI-DFVISGINRGVNMGYDVHYSGTVGAAKHGALHGIPSLAVS----SGRIDPEDGYEKEAELVLAFLEQYKSQIQS 153          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CHLL2 (5'-nucleotidase surE OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=surE PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 66/202 (32.67%), Postives = 99/202 (49.01%), Query Frame = 1
Query:  103 VNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQGTS 699
            +N   KP I+V NDDGI+  G+  L   +    R TV   AP    S +SH++T   P+  +    +     Y VSGTP DC  + +S  L    PD+++SGIN GSN   + +YSGTVA A E    G+ S++ S           D+T A +    +   +L     Q  P    L++++P ++P ++  G   T QG S
Sbjct:    1 MNELKKPHILVCNDDGIEGEGIHVLAASMKKIGRVTV--VAPAEPHSGMSHAMTLGVPLRIKEYQRNNRFFGYTVSGTPVDCIKVALSHIL-DDKPDILVSGINYGSNTATNTLYSGTVAAALEGAIQGITSLAFSL----ATYEHADFTYAGKFARKLAKKVL----QQGIPADTILSVNIP-NVPESEIAGVLSTSQGRS 190          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PSEPF (5'-nucleotidase surE OS=Pseudomonas fluorescens (strain Pf0-1) GN=surE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.391e-18
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQG 693
            I+++NDDG+ APGL +L   L       V   AP+ +KS  S S+T   P+  +   +      +++GTP DC  LG++  L    PD+V+SGIN+G+N G  V+YSGTVA A E  F   PS + S         V++   AA     ++ A          P R  LN+++P   I + +G +LT+ G
Sbjct:    3 ILISNDDGVTAPGLAALYAALADYTECVV--IAPEQDKSGASSSLTLDRPLHPQ---YLANGFISLNGTPTDCVHLGLN-GLLEREPDMVVSGINLGANLGDDVLYSGTVAAALEGRFLKRPSFAFSL----VSRQVDNLPTAAYFARKLVEA----HAGLDLPPRTVLNVNIPNLPIDHIRGIQLTRLG 178          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_METM5 (5'-nucleotidase surE OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=surE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.391e-18
Identity = 64/204 (31.37%), Postives = 100/204 (49.02%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD-------WVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERC-FLNIDLPTDIPNNKGYKLTKQGTSIFKM 711
            I++ NDDGI + GL +L  V+       + V AP +++S +  +I+   P+        D    YAVSGTP DC  LGV Q L   VPD VISGIN+G N G  +  SGT+  A E   HG  +++ S         +  G+S ++    A      I+  +  +  +  +P  C  +NI++P +   N   ++TK    ++ M
Sbjct:    5 ILLVNDDGIYSNGLLALKNVISEEFDANITVVAPTNQQSGIGRAISLFEPLRITKTKLADCSEGYAVSGTPTDCVVLGVHQVL-KKVPDYVISGINIGENLGTEITTSGTLGAAFEGAHHGAKALACSLQVTTDHLKFKEGESPIDFMNTAR-----IVRNVFKKFIDDEFP--CDVININVPDNATENTPVEITKLAKKMYSM 200          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_HAEDU (5'-nucleotidase surE OS=Haemophilus ducreyi GN=surE PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.391e-18
Identity = 75/197 (38.07%), Postives = 108/197 (54.82%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAV-SGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKS-----NVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQG 693
            I+++NDDG  A G+++L   L     + V V APD  +SA S  +T   PI        G   Y+V +GTPADC  L ++  LF +  DLV+SGIN G+N G  VVYSGTVA A E     +PS+++S   VG +S       N +  AA+  L     +L ++ +   P R  LNI++P D+P +  KG  +T+ G
Sbjct:    3 ILLSNDDGYHAEGIQTLATRLREAG-HCVTVIAPDRNRSAASSCLTLMEPIRVHQL---GTFDYSVIAGTPADCVHLALN-GLFETSFDLVVSGINHGANLGDDVVYSGTVAAALEGRHLRLPSLAVSL--VGKQSEGHLFGNNHFETAAQVVLD----VLPKLVDMALP-RQILNINVP-DLPYSAIKGMLVTRLG 186          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PROVI (5'-nucleotidase surE OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=surE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.041e-18
Identity = 64/203 (31.53%), Postives = 98/203 (48.28%), Query Frame = 1
Query:  100 IVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTS 699
            +   D +P I+V NDDGI+  G+  L   +      TV   AP    S +SH++T   P+  +    +     + VSGTP DC  + +S  + P  PDL++SGIN GSN     +YSGTVA A E    GV S++ S           D+T A +    +   +L     +  P    L+ ++P ++P +   G  +T+QG S
Sbjct:    1 MTKQDRRPEILVCNDDGIEGEGIHVLAASMKKLGNVTV--VAPAEPHSGMSHAMTLGVPLRIKEFRRNNRFFGHTVSGTPVDCIKVALSH-IMPVKPDLIVSGINYGSNTATSTIYSGTVAAALEGAIQGVTSIAFSLT----TYEHADFTYAGKFARKLARKVL----QKGLPADTILSANIP-NVPESDIAGVVITRQGRS 191          
The following BLAST results are available for this feature:
BLAST of CK935259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_RHORT4.128e-1834.175'-nucleotidase surE OS=Rhodospirillum rubrum (str... [more]
SURE_PSEF54.128e-1834.035'-nucleotidase surE OS=Pseudomonas fluorescens (s... [more]
SURE_METM74.128e-1831.865'-nucleotidase surE OS=Methanococcus maripaludis ... [more]
SURE_LEPBP4.128e-1834.785'-nucleotidase surE OS=Leptospira biflexa serovar... [more]
SURE_LEPBA4.128e-1834.785'-nucleotidase surE OS=Leptospira biflexa serovar... [more]
SURE_CHLL24.128e-1832.675'-nucleotidase surE OS=Chlorobium limicola (strai... [more]
SURE_PSEPF5.391e-1834.215'-nucleotidase surE OS=Pseudomonas fluorescens (s... [more]
SURE_METM55.391e-1831.375'-nucleotidase surE OS=Methanococcus maripaludis ... [more]
SURE_HAEDU5.391e-1838.075'-nucleotidase surE OS=Haemophilus ducreyi GN=sur... [more]
SURE_PROVI7.041e-1831.535'-nucleotidase surE OS=Prosthecochloris vibriofor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_H04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935259 ID=CK935259; Name=CK935259; organism=Citrus sinensis; type=EST; length=815bp
GGGAAACGCACGACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTGGA
CCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTA
TTGTTAACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGG
ATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAA
TCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTA
GTCATAGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTT
GATGGAGTTACAGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATC
GTTGGGTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCA
GTGGCATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGG
ACAGTTGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTC
TATATCATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACAC
TCGCTGCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATC
AGGAATCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTAC
AGATATTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCA
TATTCAAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAG
ATGTTATCAACAATGACAATGGACACAGATTCAGCAGTTACAATTGAAAC
AGATACATCTACCCC
back to top