CK935259

Overview
NameCK935259
Unique NameCK935259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935259_ssr28 microsatellite CK935259_ssr28:28..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12009 contig Csv1_Contig12009:60..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_BRUME (5'-nucleotidase surE OS=Brucella melitensis GN=surE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.014e-24
Identity = 74/192 (38.54%), Postives = 107/192 (55.73%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I++TNDDGI A GL  L R+    +   V V AP++++S ++HS+T   P+  R  D      +A+ GTP DC  +GV   L P  PDLV+SG+N G+N    V YSGTVAGA E    GV ++++S  Y++ G +  V   T  AEA  P    ++  +    +PE   LN++ P   P   KG ++T QG
Sbjct:    3 ILLTNDDGIHAEGLAVLERIARKLSD-DVWVVAPETDQSGLAHSLTLSEPLRLRQID---ARHFALRGTPTDCVIMGVRHVL-PGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWET--AEAHAP---ELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQG 184          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_BRUMB (5'-nucleotidase surE OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=surE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.014e-24
Identity = 74/192 (38.54%), Postives = 107/192 (55.73%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I++TNDDGI A GL  L R+    +   V V AP++++S ++HS+T   P+  R  D      +A+ GTP DC  +GV   L P  PDLV+SG+N G+N    V YSGTVAGA E    GV ++++S  Y++ G +  V   T  AEA  P    ++  +    +PE   LN++ P   P   KG ++T QG
Sbjct:    3 ILLTNDDGIHAEGLAVLERIARKLSD-DVWVVAPETDQSGLAHSLTLSEPLRLRQID---ARHFALRGTPTDCVIMGVRHVL-PGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWET--AEAHAP---ELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQG 184          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_BRUC2 (5'-nucleotidase surE OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=surE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.014e-24
Identity = 74/192 (38.54%), Postives = 107/192 (55.73%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I++TNDDGI A GL  L R+    +   V V AP++++S ++HS+T   P+  R  D      +A+ GTP DC  +GV   L P  PDLV+SG+N G+N    V YSGTVAGA E    GV ++++S  Y++ G +  V   T  AEA  P    ++  +    +PE   LN++ P   P   KG ++T QG
Sbjct:    3 ILLTNDDGIHAEGLAVLERIARKLSD-DVWVVAPETDQSGLAHSLTLSEPLRLRQID---ARHFALRGTPTDCVIMGVRHVL-PGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWET--AEAHAP---ELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQG 184          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_AZOC5 (5'-nucleotidase surE OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=surE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.014e-24
Identity = 72/191 (37.70%), Postives = 104/191 (54.45%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLP-IINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I+VTNDDGI APGL +  R+  + +   V V AP++++S V+HS++   P+  R         YAV GTP DC  + V   L  + PDL++SG+N G N    V YSGTVAGA E    G+PS+++S  + G ++  N     AE   P +I  +LAE      P    +N++ P   P+   G  +T QG
Sbjct:    3 ILVTNDDGIHAPGLDACARIAAALSD-DVWVVAPETDQSGVAHSLSLNDPLRLRKV---AAQRYAVKGTPTDCVIMAVRHVLIDNPPDLILSGVNRGQNIAEDVSYSGTVAGAIEGTILGIPSIALSQAF-GPQTRDNPSYQTAETHGPDVIRTLLAE----GIPAGVLINVNFPDRTPDQVAGIAVTAQG 184          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_GLOVI (5'-nucleotidase surE OS=Gloeobacter violaceus GN=surE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.325e-24
Identity = 76/203 (37.44%), Postives = 115/203 (56.65%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVN-DYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRR 723
            I+V+NDDGI A G+R+L   L     +TV V  PD E+SA  H++T   P+ A   +  F+ G+ A+A++GTP+D   LG+  AL    PDLV+SGIN G+N G  V+YSGTV+ A E    G+PS+++S       S V  D+  AA+  +  + A    +  Q  PE   LN+++P  +P ++       G  + ++G RR
Sbjct:    3 ILVSNDDGILAQGIRTLANTLHRAG-HTVTVVCPDRERSATGHALTMHKPLRAEAVENLFEPGLAAWAINGTPSDSVKLGLD-ALLGERPDLVVSGINCGANLGSDVLYSGTVSAAMEGTIEGLPSIAVSL-----ASRVRCDFQPAADFLVRFVRA----LEVQPLPEAFLLNVNVPA-LPESE-----ILGARVCRLGMRR 188          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_BRUAB (5'-nucleotidase surE OS=Brucella abortus GN=surE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.325e-24
Identity = 74/192 (38.54%), Postives = 107/192 (55.73%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I++TNDDGI A GL  L R+    +   V V AP++++S ++HS+T   P+  R  D      +A+ GTP DC  +GV   L P  PDLV+SG+N G+N    V YSGTVAGA E    GV ++++S  Y++ G +  V   T  AEA  P    ++  +    +PE   LN++ P   P   KG ++T QG
Sbjct:    3 ILLTNDDGIHAEGLAVLERIARKLSD-DVWVVAPETDQSGLAHSLTLLEPLRLRQID---ARHFALRGTPTDCVIMGVRHVL-PGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWET--AEAHAP---ELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQG 184          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_BRUA2 (5'-nucleotidase surE OS=Brucella abortus (strain 2308) GN=surE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.325e-24
Identity = 74/192 (38.54%), Postives = 107/192 (55.73%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I++TNDDGI A GL  L R+    +   V V AP++++S ++HS+T   P+  R  D      +A+ GTP DC  +GV   L P  PDLV+SG+N G+N    V YSGTVAGA E    GV ++++S  Y++ G +  V   T  AEA  P    ++  +    +PE   LN++ P   P   KG ++T QG
Sbjct:    3 ILLTNDDGIHAEGLAVLERIARKLSD-DVWVVAPETDQSGLAHSLTLLEPLRLRQID---ARHFALRGTPTDCVIMGVRHVL-PGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWET--AEAHAP---ELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQG 184          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_BRUA1 (5'-nucleotidase surE OS=Brucella abortus (strain S19) GN=surE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.325e-24
Identity = 74/192 (38.54%), Postives = 107/192 (55.73%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I++TNDDGI A GL  L R+    +   V V AP++++S ++HS+T   P+  R  D      +A+ GTP DC  +GV   L P  PDLV+SG+N G+N    V YSGTVAGA E    GV ++++S  Y++ G +  V   T  AEA  P    ++  +    +PE   LN++ P   P   KG ++T QG
Sbjct:    3 ILLTNDDGIHAEGLAVLERIARKLSD-DVWVVAPETDQSGLAHSLTLLEPLRLRQID---ARHFALRGTPTDCVIMGVRHVL-PGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWET--AEAHAP---ELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQG 184          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_TRIEI (5'-nucleotidase surE OS=Trichodesmium erythraeum (strain IMS101) GN=surE PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.730e-24
Identity = 83/241 (34.44%), Postives = 120/241 (49.79%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF---DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAA-EACLPIINAILAEIRNQTYPERCFLNIDLP----TDIPNNKGYKLTKQGT----SIFK--MGWRRVTSEMQGGKMLSTMTMDTDSAVTIETDT 807
            I+V+NDDGI A G+RSL   L +       VC PD E+SA  H +T   PI A        D +TA+A SGTPADC  L +  +L  + PDLV++GIN G N G  + YSGTV+ A E     +PS++ S         +  YT    E  +    +++ +I +Q       LN+++P    T+I    G K+T+QG      IFK  +  R  T     G++L       D A+  + +T
Sbjct:    3 ILVSNDDGIFAEGIRSLANGLAAVGHEVFVVC-PDKERSATGHGLTLHQPIRAEIVKSIFDDRITAWACSGTPADCVKLALF-SLLETQPDLVLAGINHGPNLGTDIFYSGTVSAAMEGIVENIPSIAFS---------LGSYTSREFEVAVNFAQSLVQKIESQPLDNLMLLNVNIPAVKETEI---AGVKITRQGVCRYIDIFKKRVDPRGKTYYWLAGELLEETEETKDQAIPDKYNT 229          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PARUW (5'-nucleotidase surE OS=Protochlamydia amoebophila (strain UWE25) GN=surE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.260e-24
Identity = 76/196 (38.78%), Postives = 110/196 (56.12%), Query Frame = 1
Query:  118 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTA--YAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLP-IINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQG 693
            KP I+VTNDDG+ A G+R L + +   +   + + AP  E+SAVS SIT R P+     D+    A  ++V+GTPADC  L ++  L P  P L++SGIN G+N G ++ YSGTVA   E    G+P ++ SY   G   N + + +  E+ +P I+N  L         E  FLN++ P T+    KG +LT QG
Sbjct:    4 KPLILVTNDDGVHAKGIRHLWQSI--QDLADLIIVAPQQEQSAVSLSITVRRPLHIEKVDWLNAQADVWSVNGTPADCVKLALNVVL-PKRPQLIVSGINRGTNAGRNIFYSGTVAAIMEGVMQGIPGIAFSY---GDYFNPSYHLI--ESFIPGIVNYAL----QNAMQEGTFLNVNFPKTEHGPIKGIRLTTQG 187          
The following BLAST results are available for this feature:
BLAST of CK935259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_BRUME1.014e-2438.545'-nucleotidase surE OS=Brucella melitensis GN=sur... [more]
SURE_BRUMB1.014e-2438.545'-nucleotidase surE OS=Brucella melitensis biotyp... [more]
SURE_BRUC21.014e-2438.545'-nucleotidase surE OS=Brucella canis (strain ATC... [more]
SURE_AZOC51.014e-2437.705'-nucleotidase surE OS=Azorhizobium caulinodans (... [more]
SURE_GLOVI1.325e-2437.445'-nucleotidase surE OS=Gloeobacter violaceus GN=s... [more]
SURE_BRUAB1.325e-2438.545'-nucleotidase surE OS=Brucella abortus GN=surE P... [more]
SURE_BRUA21.325e-2438.545'-nucleotidase surE OS=Brucella abortus (strain 2... [more]
SURE_BRUA11.325e-2438.545'-nucleotidase surE OS=Brucella abortus (strain S... [more]
SURE_TRIEI1.730e-2434.445'-nucleotidase surE OS=Trichodesmium erythraeum (... [more]
SURE_PARUW2.260e-2438.785'-nucleotidase surE OS=Protochlamydia amoebophila... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_H04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935259 ID=CK935259; Name=CK935259; organism=Citrus sinensis; type=EST; length=815bp
GGGAAACGCACGACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTGGA
CCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTA
TTGTTAACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGG
ATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAA
TCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTA
GTCATAGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTT
GATGGAGTTACAGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATC
GTTGGGTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCA
GTGGCATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGG
ACAGTTGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTC
TATATCATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACAC
TCGCTGCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATC
AGGAATCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTAC
AGATATTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCA
TATTCAAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAG
ATGTTATCAACAATGACAATGGACACAGATTCAGCAGTTACAATTGAAAC
AGATACATCTACCCC
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