CK935259

Overview
NameCK935259
Unique NameCK935259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935259_ssr28 microsatellite CK935259_ssr28:28..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12009 contig Csv1_Contig12009:60..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_METKA (5'-nucleotidase surE OS=Methanopyrus kandleri GN=surE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.260e-24
Identity = 68/180 (37.78%), Postives = 104/180 (57.78%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVN------DYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 648
            I++TNDDGI +PGLR+ VR   S    TV   AP +++S V  SI+   P+     + +GV A A+SGTPAD   +G   ++    PDLV+SGIN+G N    V  SGTV  A EA+ +G+P+++IS +    ++ V+      D+TLA    + ++ A+L  IR   +     LN+++P
Sbjct:    3 ILITNDDGIASPGLRAAVRACRSVGEVTV--VAPATQQSGVGRSISLLEPVRVEEIEVEGVDALAISGTPADAVLIGAF-SIMDEPPDLVVSGINLGENVSADVTTSGTVGAALEAYGNGIPAIAISQEVRDARARVDNNAKNVDFTLA----IRVLKALLEAIRGANW--EGVLNVNVP 173          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_GEOSM (5'-nucleotidase surE OS=Geobacter sp. (strain M21) GN=surE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.260e-24
Identity = 67/178 (37.64%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIP 660
            I++TNDDG+ +PGL +L++ +       V V APD E+SAVSH++T  HP+ A          ++V GTP DC +LG+  +L    PDLVISG+N G+N    V YSGTVA A EA   G+P++++S        +  ++  AA AC      +   +  +  P   +LN+++P D+P
Sbjct:    3 ILLTNDDGVHSPGLAALIKKVSEVAE--VVVVAPDREQSAVSHALTLHHPLRAARIR---ANVFSVEGTPTDCVNLGI-HSLLSYRPDLVISGVNRGANIADDVTYSGTVAAALEATLMGIPAIAVSL----VTRSAGEHFEAAAACAA---KLAVTVHQKGLPRDTYLNVNVP-DLP 166          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CYAA5 (5'-nucleotidase surE OS=Cyanothece sp. (strain ATCC 51142) GN=surE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.260e-24
Identity = 72/193 (37.31%), Postives = 108/193 (55.96%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I+++NDDGI A G+R+L   L     Y V V  PD E+SA  H +T   PI A   +  FD  +TA++ SGTP+DC  L +S +L  + PD ++SGIN GSN G  V+YSGTV+ A E    G+PS+++S   +   S+      A  AC      ++ ++ +   P+   LN+++P    +   G  LT+QG
Sbjct:    9 ILISNDDGIFALGVRTLANTLAQAG-YQVTVVCPDRERSATGHGLTLHRPIRADIVEDFFDPKITAWSCSGTPSDCVKLALS-SLIENRPDFIVSGINHGSNLGTDVLYSGTVSAAMEGIIEGIPSIAMS---LASFSSRQFQPGADFAC-----GLIQQLYDHPLPDSTLLNVNIPPVTADAIAGVMLTRQG 191          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CAMJD (5'-nucleotidase surE OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=surE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.260e-24
Identity = 74/196 (37.76%), Postives = 107/196 (54.59%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVS-GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPTDIPNNKGYKLTKQGTSIF 705
            I++TNDDG ++ GL+ LV++L    +  + + AP SEKSA SHSIT   P+        G   Y +  GTPADC  L         +PDLVISGIN G+N G  + YSGT AGA EA   G+ ++++S  +   +  + DY  A    L I   I+  I ++ +P  ++ FLNI+ P      KG K+ K G  ++
Sbjct:    4 ILITNDDGYESEGLKKLVKMLKKEFKAKITIVAPASEKSACSHSITLTKPLRFVKV---GKRFYKLDDGTPADCVYLAFHALYKTRLPDLVISGINKGANVGEDITYSGTCAGAMEAALQGISAIALSQFYKKSEKEL-DYKNA----LKITKKIIQNIFDKDFPLEKKEFLNINFPAK-SKIKGIKICKAGKRVY 190          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_ANAVT (5'-nucleotidase surE OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=surE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.260e-24
Identity = 69/194 (35.57%), Postives = 106/194 (54.64%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD---FDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVN-DYTLAAEACLPIINAILAEIRNQTYPERCFLNIDL-PTDIPNNKGYKLTKQG 693
            ++++NDDGI A G+R+L   L         VC PD E+SA  H +T   PI A   +      + A+A  GTP+DC  L +  AL  S PDLV+SGIN G+N G  ++YSGTV+ A E    G+PS++ S       S+++ ++  AA+    ++  + A    +  P+   LN+++ P +     G KLT+QG
Sbjct:    3 LLISNDDGISALGIRTLANALAEVGHDVTVVC-PDRERSATGHGLTLHQPIRAEIVESIFHPAIKAWACDGTPSDCVKLAL-WALLDSPPDLVLSGINQGANLGTEILYSGTVSAAMEGMIEGIPSIAFSL-----TSHISRNFQPAAKFATILVEQLAA----KPIPDLMLLNVNIPPVEWEEIAGVKLTRQG 185          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_ANASP (5'-nucleotidase surE OS=Anabaena sp. (strain PCC 7120) GN=surE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.260e-24
Identity = 69/194 (35.57%), Postives = 106/194 (54.64%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD---FDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVN-DYTLAAEACLPIINAILAEIRNQTYPERCFLNIDL-PTDIPNNKGYKLTKQG 693
            ++++NDDGI A G+R+L   L         VC PD E+SA  H +T   PI A   +      + A+A  GTP+DC  L +  AL  S PDLV+SGIN G+N G  ++YSGTV+ A E    G+PS++ S       S+++ ++  AA+    ++  + A    +  P+   LN+++ P +     G KLT+QG
Sbjct:    3 LLISNDDGISALGIRTLANALAEAGHDVTVVC-PDRERSATGHGLTLHQPIRAEIVESIFHPAIKAWACDGTPSDCVKLAL-WALLESPPDLVLSGINQGANLGTEILYSGTVSAAMEGMIEGIPSIAFSL-----TSHISRNFQPAAKFATILVEQLAA----KPIPDLMLLNVNIPPVEWEEIAGVKLTRQG 185          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PROM4 (5'-nucleotidase surE OS=Prochlorococcus marinus (strain MIT 9211) GN=surE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.951e-24
Identity = 70/207 (33.82%), Postives = 107/207 (51.69%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF---DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI---SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVT 729
            I+++NDDG+ A G+R+L             VC PD E+SA  H +T   PI A  A+     GV+A+  +GTPADC  L +++ L P  PDL++SGIN G N G  +  SGTVA A E    G+P+++I   S+ W        D++ A++  L I      E   + +P++  LNI+ P    +  G           ++GW R++
Sbjct:    6 ILISNDDGVFAEGIRTLAGAAAFRGHQVTVVC-PDQERSATGHGLTLHSPIRAEKANELFGKGVSAWGCNGTPADCVKLALNEIL-PEKPDLILSGINHGPNLGTDIFCSGTVAAALEGTLAGIPAIAISIASFQW-------RDFSFASQLALEIAE----EALTKNWPQKLLLNINTPPCKSSEMG-----------QLGWTRLS 188          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_HALOH (5'-nucleotidase surE OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=surE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.951e-24
Identity = 75/199 (37.69%), Postives = 109/199 (54.77%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD---GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQGTSIFK 708
            +++TNDDG+ A G+  L   LVS   + V V APD E+SA  H+IT  +P+ A     +    +  Y + GTPADC  LGV + L    PD++ISGIN G N GY V+YSGTV+ A E +  G  S+++S +  G       Y     A    I  +L      +  ++  LNI++P D+P  K  G K+TK G S+++
Sbjct:    3 VLLTNDDGVYAEGIFILASYLVSAG-HRVVVSAPDRERSATGHAITISYPLRAYKIKLNIKGEIDVYKIDGTPADCVKLGVEK-LAGFKPDIIISGINDGPNLGYDVLYSGTVSAAIEGWMMGYTSIAVSLNSNG------QYHFKTGA--DFIVRLLNNFDFLSLDQKMLLNINIP-DLPGEKINGIKITKLGKSLYE 190          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_FLAJ1 (5'-nucleotidase surE OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=surE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.951e-24
Identity = 73/204 (35.78%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  112 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPI--SARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIF 705
            D KP I+VTNDDGI APG+R+L+ V+ +     V V APD  +SA+ H+IT  + +       D D +T Y+ SGTP DC  L V++ L    PDL +SGIN GSN   +V+YSGT++ A EA   G+ ++  S   +DW              E     +  I  E      P    LN++ P       KG K+ +Q  + +
Sbjct:    3 DEKPLILVTNDDGILAPGIRALISVMETIG--DVVVVAPDKPQSAMGHAITINNTLFLDKISKDDDTITEYSCSGTPVDCVKLAVNEIL-KRKPDLCVSGINHGSNSSINVIYSGTMSAAVEAGIEGIQAIGFSLLDFDW----------NADFEPAKAFVKKITLETLKNKLPPGVVLNVNFPKLSEKEIKGIKVCRQAKAYY 193          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_AGRVS (5'-nucleotidase surE OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=surE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.951e-24
Identity = 75/192 (39.06%), Postives = 104/192 (54.17%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I++TNDDGI A GL  L R+   T    V + AP++++S ++HS+T   P+  R     G   YA+ GTP DC  + + + L P  PDLV+SG+N G+N    V YSGTVAGA E   HGV S ++S  Y +V G S   D     E   P   A++A++     P   FLN++ P   P    G  +T QG
Sbjct:    3 ILLTNDDGIHADGLAVLERI-ARTLSDDVWIVAPETDQSGLAHSLTLSEPLRLRQL---GENRYALRGTPTDCVIMAIRK-LLPGKPDLVLSGVNAGANLADDVTYSGTVAGAIEGTVHGVRSFALSQAYSYVAGHSIPWD---VVETHAP---ALIAKLMRIDLPPGTFLNLNFPNCEPGEVAGVDVTSQG 183          
The following BLAST results are available for this feature:
BLAST of CK935259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_METKA2.260e-2437.785'-nucleotidase surE OS=Methanopyrus kandleri GN=s... [more]
SURE_GEOSM2.260e-2437.645'-nucleotidase surE OS=Geobacter sp. (strain M21)... [more]
SURE_CYAA52.260e-2437.315'-nucleotidase surE OS=Cyanothece sp. (strain ATC... [more]
SURE_CAMJD2.260e-2437.765'-nucleotidase surE OS=Campylobacter jejuni subsp... [more]
SURE_ANAVT2.260e-2435.575'-nucleotidase surE OS=Anabaena variabilis (strai... [more]
SURE_ANASP2.260e-2435.575'-nucleotidase surE OS=Anabaena sp. (strain PCC 7... [more]
SURE_PROM42.951e-2433.825'-nucleotidase surE OS=Prochlorococcus marinus (s... [more]
SURE_HALOH2.951e-2437.695'-nucleotidase surE OS=Halothermothrix orenii (st... [more]
SURE_FLAJ12.951e-2435.785'-nucleotidase surE OS=Flavobacterium johnsoniae ... [more]
SURE_AGRVS2.951e-2439.065'-nucleotidase surE OS=Agrobacterium vitis (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_H04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935259 ID=CK935259; Name=CK935259; organism=Citrus sinensis; type=EST; length=815bp
GGGAAACGCACGACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTGGA
CCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTA
TTGTTAACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGG
ATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAA
TCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTA
GTCATAGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTT
GATGGAGTTACAGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATC
GTTGGGTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCA
GTGGCATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGG
ACAGTTGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTC
TATATCATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACAC
TCGCTGCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATC
AGGAATCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTAC
AGATATTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCA
TATTCAAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAG
ATGTTATCAACAATGACAATGGACACAGATTCAGCAGTTACAATTGAAAC
AGATACATCTACCCC
back to top