CK935265

Overview
NameCK935265
Unique NameCK935265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.024e-20
Identity = 44/71 (61.97%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSV-DQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAG+DLP SCRAG+CSTCAGKLVSG+  +Q D +FLDD+Q+ AG+++TC++ PT DC I +H+E E+
Sbjct:   29 DAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.979e-20
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G++LPYSCRAG+CS+CAGK+++GS+DQSD +FLDD+Q   GY LTC++ PTSD  I++H E EL
Sbjct:   24 DKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20
Identity = 41/70 (58.57%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAG+DLP+SCR+G+CS+C G L  G+VDQSD +FLDD+Q+ AG +LTC++ PTS+C I++H+E+ +
Sbjct:   29 DAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAI 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.360e-17
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G++LP+SC +G+CS+C GK+V G VDQSD  FLDD QM  G+ L C++ P S+C I++H+E  L
Sbjct:   29 DGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G++LP+SC +G+CS+C GK+V G VDQSD  FLDD Q+  G+ L C++ P S+C I++H+E  L
Sbjct:   29 DGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.530e-16
Identity = 34/70 (48.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            +A EEA +DLP+SC +GACS+C GK+V G ++Q D +FLD+ Q+  G++L C++ P +DC I++H+E  L
Sbjct:   29 EAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.998e-16
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   16 EAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            E G++LP+SC +G+CS+C GK+V G VDQSD  FLDD QM  G+ L C++ P S+C I++H+E  L
Sbjct:   33 ENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.610e-16
Identity = 34/70 (48.57%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA E+  ++LP+SC++G+CS+C  K+V G VDQS+  FLD+ QM  G+++ C+S P SDC I++H+E  L
Sbjct:   29 DAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.583e-13
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D+ + AGVDLP SC  G C+TCA +++SG VDQ D   +     + GY L C++ P SD  I++HKE+EL
Sbjct:   27 DSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
The following BLAST results are available for this feature:
BLAST of CK935265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA1.024e-2061.97Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_PERBI2.979e-2061.43Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER2_NOSMU6.636e-2058.57Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FERH_ANASP2.360e-1752.86Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_ANAVT6.868e-1751.43Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO1.530e-1648.57Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FERH_FREDI1.998e-1653.03Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERV_ANAVT2.610e-1648.57Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_SYNP61.583e-1347.14Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_H12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935265 ID=CK935265; Name=CK935265; organism=Citrus sinensis; type=EST; length=506bp
GGGGATGCANNNGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGC
TGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACC
AGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTATCTG
CTGACTTGCATTTCATGCCCGACTTCAGATTGCGTGATTCAGTCTCACAA
GGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCAAGT
ATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGGACC
TACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCTTTA
AATTTTCATTTGGTTATACTATTACTGGCATTTTGGGATTTCATTTCATG
TGAAAGGGTGTATAATTTCTCAAAATAAGATAATTACCCCCGAAAAAAAA
AAAAACCAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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