CK935265

Overview
NameCK935265
Unique NameCK935265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAG+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD QM  GY+LTC++ PTSD VI++HKEE +
Sbjct:   78 DAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.355e-25
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAG DLP+SCRAGACS+C GK+VSGSVD+S+GSFLDD QME G++LTCI+ P SD VI++HKEEEL
Sbjct:   25 DAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.076e-25
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAGVDLPYSCRAGACSTCAGK+  G VDQSDGSFL+D+  E GY+LTC++ P SD VI +HKEEEL
Sbjct:   28 DAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.246e-25
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAGVDLPYSCRAGACSTCAG++V G VDQS+GSFL+D+  E G++LTC++ P SDCVI +HKE EL
Sbjct:   28 DAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 5.246e-25
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EE G+DLPYSCRAGACSTCAGK+V G+VDQSD SFLDD Q+ AGY+LTC++ P+SDC +++H+EE L
Sbjct:   29 DAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.852e-25
Identity = 48/70 (68.57%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EE G++LPYSCRAGACSTCAGK++SG++DQS+ SFLDD+QM AG+LLTC++ PTSDC +Q+H E++L
Sbjct:   28 DAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.852e-25
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G+DLPYSCRAG+CS+CAGK+  G VDQSDGSFLDD QME G++LTC++ PTSD VI++HKEEEL
Sbjct:   26 DQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.949e-25
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G+DLPYSCRAGACSTCAGK+  G +DQSD SFLDD+Q+EAGY+LTC++ P SDC I +H+EEEL
Sbjct:   29 DVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.949e-25
Identity = 50/70 (71.43%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  E+ G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+E GY+LTC++ PTSD  I++HKEE+L
Sbjct:   29 DIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.169e-24
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G+DLPYSCRAG+CS+CAGKLVSG +DQSD SFLDD+QMEAG++LTC + P SD VI++HKEEEL
Sbjct:   72 DQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
The following BLAST results are available for this feature:
BLAST of CK935265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_ARATH1.803e-2572.86Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER1_EQUAR2.355e-2574.29Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER1_RAPSA3.076e-2574.29Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER2_RAPSA5.246e-2571.43Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER1_CYAPA5.246e-2570.00Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_BUMFI6.852e-2568.57Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FERA_ALOMA6.852e-2571.43Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_SYNP48.949e-2570.00Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER1_NOSMU8.949e-2571.43Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER_WHEAT1.169e-2472.86Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_H12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935265 ID=CK935265; Name=CK935265; organism=Citrus sinensis; type=EST; length=506bp
GGGGATGCANNNGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGC
TGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACC
AGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTATCTG
CTGACTTGCATTTCATGCCCGACTTCAGATTGCGTGATTCAGTCTCACAA
GGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCAAGT
ATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGGACC
TACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCTTTA
AATTTTCATTTGGTTATACTATTACTGGCATTTTGGGATTTCATTTCATG
TGAAAGGGTGTATAATTTCTCAAAATAAGATAATTACCCCCGAAAAAAAA
AAAAACCAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
back to top