CK935265

Overview
NameCK935265
Unique NameCK935265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.526e-24
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAG+DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD QM  G++LTC++ PTSDC IQ+H+EE L
Sbjct:   56 DAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.526e-24
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EE G+DLPYSCRAGACS+CAGK+ SGSVDQSD SFL+D QME G++LTCI+ PT D  I++HKEEEL
Sbjct:   26 DAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.526e-24
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EE G+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD Q++ G++LTC++ PTS+C I +H+EE L
Sbjct:   29 DAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.994e-24
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA E+ G+DLPYSCRAGACS+CAGK+ +GSV+Q DGSFLD+ QMEAG++LTC++ PTSD  I++HKEE+L
Sbjct:   27 DAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.994e-24
Identity = 48/70 (68.57%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAG+DLPYSCRAG+CS+CAGK+ SGSV+Q DGSFLDD+Q++ G++LTC++ PT D  I++HKEEEL
Sbjct:   77 DAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.604e-24
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G+DLPYSCRAG+CS+CAGKLVSG +DQSD SFLDD+QME G++LTC + P SD VI++HKEEEL
Sbjct:   26 DQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.604e-24
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G+DLPYSCRAGACSTCAGKLVSG     D SFLDD+Q++AGY+LTC++ PT DCVI++HKEE L
Sbjct:   27 DVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.400e-24
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAG+DLPYSCRAG+CS+CAGK+VSG VDQSD SFLDD+Q+  G++LTC + PTSD  I++HKEEEL
Sbjct:   26 DAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.400e-24
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            +A E AGV+LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM  GYLLTCIS P +DCVI +HKEE+L
Sbjct:   85 EAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.400e-24
Identity = 49/70 (70.00%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAGVDLPYSCRAG+CS+CAGK+ SG+VDQSD SFLDD+QM++G++LTC++  TSDC I +H+EE L
Sbjct:   25 DAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          
The following BLAST results are available for this feature:
BLAST of CK935265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_CHLRE1.526e-2471.43Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER2_SPIOL1.526e-2472.86Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER1_CYACA1.526e-2470.00Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER2_PHYES1.994e-2468.57Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_MESCR1.994e-2468.57Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_HORVU2.604e-2471.43Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER_APHSA2.604e-2470.00Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_BRANA3.400e-2471.43Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER6_MAIZE3.400e-2470.00Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER1_DUNSA3.400e-2470.00Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_H12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935265 ID=CK935265; Name=CK935265; organism=Citrus sinensis; type=EST; length=506bp
GGGGATGCANNNGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGC
TGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACC
AGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTATCTG
CTGACTTGCATTTCATGCCCGACTTCAGATTGCGTGATTCAGTCTCACAA
GGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCAAGT
ATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGGACC
TACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCTTTA
AATTTTCATTTGGTTATACTATTACTGGCATTTTGGGATTTCATTTCATG
TGAAAGGGTGTATAATTTCTCAAAATAAGATAATTACCCCCGAAAAAAAA
AAAAACCAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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