CK935265

Overview
NameCK935265
Unique NameCK935265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.157e-22
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EE G++LPYSCRAGACSTCAGK+  G +DQS+ +FLDD+Q+ AG++LTCI+ P SDC +  H+E+EL
Sbjct:   29 DAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.157e-22
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA E+AG+DLPYSCRAGACS+C G +  G+VDQSD SFLDD+QM  G+ LTC + PTS+C I++HKE++L
Sbjct:   26 DAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.157e-22
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++ P SD  I++HKEEEL
Sbjct:   26 DQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.429e-22
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAG+DLPYSCRAGACS+CAGK+ SG VDQSD SFLDD QM  G++LTC++ PTSD  I +H+E  L
Sbjct:   24 DAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.090e-22
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G+DLPYSCRAG+CS+CAGK+VSG VD SD SFL+D+ M+AGY+LTC +   SD VI++HKEEE+
Sbjct:   27 DNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.090e-22
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++ P SD  I++HKEEEL
Sbjct:   26 DQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 7.090e-22
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EE G+DLPYSCRAG+CS+CAGKL +GS++Q D SFLDD+Q++ G++LTC + P SD  I++HKEEEL
Sbjct:   76 DAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.090e-22
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G DLPYSCRAG+CS+CAGK+ +GSVDQSDG+FLD++Q  AG++LTC++ P  D  I++HKEEEL
Sbjct:   73 DQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.260e-22
Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++ P SD  I++HKEE+L
Sbjct:   26 DQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.260e-22
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G DLPYSCRAGACS+CAGK+V GSVDQSD SFLDD+Q+  G++LTC++ P S+  I++HKEE L
Sbjct:   26 DRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          
The following BLAST results are available for this feature:
BLAST of CK935265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_ODOSI4.157e-2262.86Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER_EUGVI4.157e-2264.29Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_DATAR4.157e-2264.29Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_CHLFU5.429e-2268.57Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER_PANGI7.090e-2265.71Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER_ATRBE7.090e-2264.29Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER1_SPIOL7.090e-2264.29Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER1_SOLLC7.090e-2264.29Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER_SOLNI9.260e-2262.86Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER_SOLLS9.260e-2265.71Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_H12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935265 ID=CK935265; Name=CK935265; organism=Citrus sinensis; type=EST; length=506bp
GGGGATGCANNNGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGC
TGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACC
AGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTATCTG
CTGACTTGCATTTCATGCCCGACTTCAGATTGCGTGATTCAGTCTCACAA
GGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCAAGT
ATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGGACC
TACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCTTTA
AATTTTCATTTGGTTATACTATTACTGGCATTTTGGGATTTCATTTCATG
TGAAAGGGTGTATAATTTCTCAAAATAAGATAATTACCCCCGAAAAAAAA
AAAAACCAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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