CK935265

Overview
NameCK935265
Unique NameCK935265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.260e-22
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DA EEAG+DLPYSCRAGACS+C GKL+ G VDQS+ SFLDD+QM  G++LTC++ P  D  I++H EE+L
Sbjct:   26 DAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.580e-21
Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D+ E+ G+DLPYSCRAGACSTCAG +  G+VDQSD SFLDD+Q+   ++LTC++ PTSDC I++H+EE+L
Sbjct:   27 DSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.580e-21
Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++ P SD  I++HKEE+L
Sbjct:   26 DQAEEEGHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.063e-21
Identity = 45/62 (72.58%), Postives = 55/62 (88.71%), Query Frame = 1
Query:   28 DLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DLP SC+AGACSTC GK+VSG+VDQS+GSFLDD Q+E GY+LTCI+ P SD VI++HKE+EL
Sbjct:   32 DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.063e-21
Identity = 45/62 (72.58%), Postives = 55/62 (88.71%), Query Frame = 1
Query:   28 DLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            DLP SC+AGACSTC GK+VSG+VDQS+GSFLDD Q+E GY+LTCI+ P SD VI++HKE+EL
Sbjct:   32 DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.519e-21
Identity = 43/70 (61.43%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D+ EE G DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD+Q+  G++LTC++ P S+  I++HKE++L
Sbjct:   26 DSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.596e-21
Identity = 44/70 (62.86%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G+ LPYSCRAG+CS+CAGK+ +G V+QSDGSFLDD+Q+E G++LTC++   SD  I++HKEEEL
Sbjct:   26 DHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEEL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.596e-21
Identity = 43/70 (61.43%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++ P SD  I++HKEE+L
Sbjct:   26 DQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.839e-21
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            ++ E AG++LPYSCR+G C TC GKLVSG VDQS GSFL++ Q++ GY+LTCI+ P  DCV+ +HK+ +L
Sbjct:   78 ESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of CK935265 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.024e-20
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 DAXEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISCPTSDCVIQSHKEEEL 213
            D  EE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++ P SD  I++HKEE L
Sbjct:   26 DQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEAL 95          
The following BLAST results are available for this feature:
BLAST of CK935265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_GLEJA9.260e-2264.29Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER_RHOPL1.580e-2162.86Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER2_HYONI1.580e-2162.86Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER2_EQUTE2.063e-2172.58Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_EQUAR2.063e-2172.58Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FER_SOLLY3.519e-2161.43Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_MEDSA4.596e-2162.86Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FER1_HYONI4.596e-2161.43Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER4_ARATH7.839e-2158.57Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER_LYCCN1.024e-2061.43Ferredoxin OS=Lycium chinense PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_H12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935265 ID=CK935265; Name=CK935265; organism=Citrus sinensis; type=EST; length=506bp
GGGGATGCANNNGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGC
TGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACC
AGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTATCTG
CTGACTTGCATTTCATGCCCGACTTCAGATTGCGTGATTCAGTCTCACAA
GGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCAAGT
ATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGGACC
TACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCTTTA
AATTTTCATTTGGTTATACTATTACTGGCATTTTGGGATTTCATTTCATG
TGAAAGGGTGTATAATTTCTCAAAATAAGATAATTACCCCCGAAAAAAAA
AAAAACCAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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