CK935270

Overview
NameCK935270
Unique NameCK935270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935270_ssr719 microsatellite CK935270_ssr719:719..734. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6277 contig Csv1_Contig6277:19..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.883e-19
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  302 KAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 520
            K AT+  E   + +YRGVRKRPWGKFAAEIRD  + G R+WLGT+DT E AALAYD+AAF ++GS A LNFP+
Sbjct:   69 KEATVAAEEEEK-SYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPA 140          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.212e-19
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 532
            +YRGVR+RPWGKFAAEIRD  + G+R+WLGT+DT   AA AYDRAAFK+RGSKA +NFP  +A+
Sbjct:  144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEVAN 207          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.478e-19
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            +YRGVR+RPWGKFAAEIRD  K GSR+WLGT+DT   AA AYD AAF++RGSKA LNFP
Sbjct:  155 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.155e-19
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            YRGVR+RPWGK+AAEIRD +K+G R+WLGT+DT E AA AYDRAA+ MRG  A LNFP
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFP 77          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.155e-19
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 532
            +YRGVR+RPWGKFAAEIRD  + G+R+WLGT+DT   AA AYDRAA+K+RGSKA +NFP  +A+
Sbjct:  137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEVAN 200          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.220e-18
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 2
Query:  338 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            + YRGVRKRPWGK+AAEIRD  ++G+R+WLGT++T E AA AYDRAAF MRG +A LNFP
Sbjct:   12 MKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.220e-18
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 2
Query:  335 RVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLI-----ASNVEPQPHGITK 565
            R +YRGVR+RPWGK+AAEIRD KK  +R+WLGT++T E AALAYDRAA K +G+KAKLNFP  +      + +   P G+++
Sbjct:   36 RRHYRGVRQRPWGKWAAEIRDPKK-AARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTISHAPRGVSE 116          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.594e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  335 RVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 520
            +  +RGVR+RPWGKFAAEIRD  +NG+RLWLGT++T E AA AYDRAAF +RG  A LNFP+
Sbjct:   17 QARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPN 78          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.594e-18
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            +YRGVRKRPWGKFAAEIRD  +NG R+WLGT+D  E AALAYD+AAF  +GS A LNFP
Sbjct:   85 SYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFP 143          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.719e-18
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 2
Query:  266 PPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 532
            PPQ   +G  + K    +  +     YRGVR+RPWGK+AAEIRD  K  +R+WLGT++T E AA AYD AA + RGSKAKLNFP  + +
Sbjct:   35 PPQPLITGSAVTKECESSMSLERPKKYRGVRQRPWGKWAAEIRDPHK-ATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVGT 122          
The following BLAST results are available for this feature:
BLAST of CK935270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ERF94_ARATH1.883e-1964.38Ethylene-responsive transcription factor ERF094 OS... [more]
ERF5_TOBAC3.212e-1968.75Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF102_ARATH5.478e-1974.58Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF97_ARATH7.155e-1972.41Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF5_NICSY7.155e-1967.19Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF95_ARATH1.220e-1870.00Ethylene-responsive transcription factor ERF095 OS... [more]
EF113_ARATH1.220e-1856.10Ethylene-responsive transcription factor ERF113 OS... [more]
ERF98_ARATH1.594e-1867.74Ethylene-responsive transcription factor ERF098 OS... [more]
ERF93_ARATH1.594e-1872.88Ethylene-responsive transcription factor 15 OS=Ara... [more]
RAP26_ARATH2.719e-1851.69Ethylene-responsive transcription factor RAP2-6 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935270 ID=CK935270; Name=CK935270; organism=Citrus sinensis; type=EST; length=878bp
GGGGAAACACAGTACAGATCACTCTCAAATCCAAGAANNNACAGCAAAAT
CATAACATCATATTCCCCGGCAAATTAAATTCAAGCTTAACTTTTCGTTT
ACAGATTAAAGTTTCAGCTTCAGTGATACACATAAACTCTTGAACTCAAG
CCCTAACTCTGATTCAATCCATTGAAATATGGAGGATTGCGAAGCTTTAC
ACGACACTGTTAAGGAGGGGTGGATTTCGTTTGATCAGCTTGATGGAAAG
TCGACGCCTCATGCTCCGCCTCAGGCTCAGGCTAGTGGATTTCGTTTACA
GAAGGCAGCCACGATGACACGTGAGATTCACGTGCGTGTAAATTATCGAG
GTGTGAGGAAGAGGCCGTGGGGAAAGTTTGCTGCGGAGATAAGGGATCGT
AAAAAGAATGGCTCACGACTTTGGCTGGGGACCTATGATACGCCTGAGGG
TGCTGCGTTGGCTTATGATAGAGCCGCTTTCAAGATGCGCGGCTCAAAAG
CCAAGCTTAATTTTCCAAGCCTCATTGCCTCAAACGTTGAGCCTCAGCCT
CACGGAATTACGAAAAAGAATATGGCTTCTTCTTCGTCATCCTCATCCAT
CGCTGCAGATTAAATCTCCGAATTTGGGTTTAATTAGCTGAGAAATAATA
TTTCTACTTATTTTTGAAGTAATTGACATTAATTCGCCTTTTATTAATAT
TAATGTTGTGTGTATATATATGTATGTATGTATGATGTATCTGCCCTGCT
TCATGTATCGTTTGGGTGATTTGATGATCCGTAATTGTAACAACTGGTGC
AATTCATAACTTGACCCCAGTCCATCGATCAATGTACGTAACGATTTTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAA
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