CK935270

Overview
NameCK935270
Unique NameCK935270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  275 AQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            ++  G +     TM +E+H    +RGVRKRPWG++AAEIRD  K  +R+WLGT+DT E AA AYD AA + RGSKAK NFP
Sbjct:   14 SEGGGGKTMTMTTMRKEVH----FRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 2
Query:  296 LQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            ++ AA  T E +  V YRGVRKRPWG++AAEIRD  K  SR+WLGT+DTPE AA AYD+ A + RG+KAK NFP
Sbjct:    5 VKTAAVKTNEGN-GVRYRGVRKRPWGRYAAEIRDPFKK-SRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  248 KSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKN 571
            K T  +  QA+ S  R +K             YRG+R+RPWGK+AAEIRD +K GSR WLGT+DT E AA AYD AA ++RG+KAK+NFP     +V  Q     K N
Sbjct:  107 KKTVESAEQAEKSSKRKRKN-----------QYRGIRQRPWGKWAAEIRDPRK-GSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTN 202          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 52/119 (43.70%), Postives = 66/119 (55.46%), Query Frame = 2
Query:  212 KEGWISFDQLDGKST------PHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQP 550
            K GW+  D     S+       H P +   S    ++A    R       YRGVR+RPWGK+AAEIRD  +  +R+WLGT+DT E AA AYD AA + RG+KAKLNFP  +     P P
Sbjct:   33 KRGWLGIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRR------YRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPPPPP 144          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            +YRGVR RPWGKFAAEIRD  + G+R+WLGT++T   AA AYD+ AF++RGSKA LNFP
Sbjct:  136 HYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.127e-17
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  269 PQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            P  ++ G R +++ +   ++  R  +RGVR+RPWG++AAEIRD  + G R+WLGTYDTPE AA+ YD+AA K++G  A  NFP
Sbjct:   73 PSTKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFP 154          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.697e-17
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL 523
            YRG+RKRPWGK+AAEIRD +K G R+WLGT++T E AA+AYD AA ++RG KAKLNFP L
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDL 137          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  338 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITK 565
            + YRGVRKRPWG++AAEIRD  K  +R+WLGT+DT E AA AYD AA   RG+KAK NFP+ +  + +  P G  +
Sbjct:   23 IRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFAR 97          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL 523
            YRGVR+R WGK+ AEIR   +N +RLWLGT+DT E AALAYDRAAFK+RG  A+LNFP+L
Sbjct:  143 YRGVRQRHWGKWVAEIR-LPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPAL 201          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  338 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 520
            V+YRGVRKRPWG++AAEIRD  K  SR+WLGT+DT E AA AYD AA + RG KAK NFPS
Sbjct:   25 VHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPS 84          
The following BLAST results are available for this feature:
BLAST of CK935270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ERF80_ARATH3.006e-1755.56Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF76_ARATH3.006e-1762.16Ethylene-responsive transcription factor 11 OS=Ara... [more]
RAP22_ARATH3.926e-1748.15Ethylene-responsive transcription factor RAP2-2 OS... [more]
EF110_ARATH3.926e-1743.70Ethylene-responsive transcription factor ERF110 OS... [more]
EF103_ARATH3.926e-1767.80Ethylene-responsive transcription factor 6 OS=Arab... [more]
PTI6_SOLLC5.127e-1749.40Pathogenesis-related genes transcriptional activat... [more]
RAP23_ARATH6.697e-1770.00Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF78_ARATH1.142e-1655.26Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF55_ARATH1.142e-1670.00Ethylene-responsive transcription factor ERF055 OS... [more]
ERF4_TOBAC1.492e-1670.49Ethylene-responsive transcription factor 4 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935270 ID=CK935270; Name=CK935270; organism=Citrus sinensis; type=EST; length=878bp
GGGGAAACACAGTACAGATCACTCTCAAATCCAAGAANNNACAGCAAAAT
CATAACATCATATTCCCCGGCAAATTAAATTCAAGCTTAACTTTTCGTTT
ACAGATTAAAGTTTCAGCTTCAGTGATACACATAAACTCTTGAACTCAAG
CCCTAACTCTGATTCAATCCATTGAAATATGGAGGATTGCGAAGCTTTAC
ACGACACTGTTAAGGAGGGGTGGATTTCGTTTGATCAGCTTGATGGAAAG
TCGACGCCTCATGCTCCGCCTCAGGCTCAGGCTAGTGGATTTCGTTTACA
GAAGGCAGCCACGATGACACGTGAGATTCACGTGCGTGTAAATTATCGAG
GTGTGAGGAAGAGGCCGTGGGGAAAGTTTGCTGCGGAGATAAGGGATCGT
AAAAAGAATGGCTCACGACTTTGGCTGGGGACCTATGATACGCCTGAGGG
TGCTGCGTTGGCTTATGATAGAGCCGCTTTCAAGATGCGCGGCTCAAAAG
CCAAGCTTAATTTTCCAAGCCTCATTGCCTCAAACGTTGAGCCTCAGCCT
CACGGAATTACGAAAAAGAATATGGCTTCTTCTTCGTCATCCTCATCCAT
CGCTGCAGATTAAATCTCCGAATTTGGGTTTAATTAGCTGAGAAATAATA
TTTCTACTTATTTTTGAAGTAATTGACATTAATTCGCCTTTTATTAATAT
TAATGTTGTGTGTATATATATGTATGTATGTATGATGTATCTGCCCTGCT
TCATGTATCGTTTGGGTGATTTGATGATCCGTAATTGTAACAACTGGTGC
AATTCATAACTTGACCCCAGTCCATCGATCAATGTACGTAACGATTTTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAA
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