CK935270

Overview
NameCK935270
Unique NameCK935270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.948e-16
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            YRGVR+RPWGKFAAEIRD K+  +R+WLGT++T E AA AYDRAA   RG +AKLNFP
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  335 RVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLI----ASNVEPQP 550
            R  YRGVR+RPWGK+AAEIRD  K  +R+WLGT+D  E AA AYD AA + RG+KAKLNFP  +     ++ E QP
Sbjct:  182 RRRYRGVRQRPWGKWAAEIRDPFK-AARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQP 256          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.341e-16
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGS-KAKLNF 514
            YRGVRKRPWGKFAAEIRD  +NG R+WLGT+ T E AA+AYD+AA ++RG+ KA  NF
Sbjct:  110 YRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNF 167          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.341e-16
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 2
Query:  338 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            V+YRGVRKRPWG++AAEIRD  K  SR+WLGT+DT E AA AYD AA + RG KAK NFP
Sbjct:   25 VHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  251 STPHAP------PQAQASGFRLQKAA-----------TMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL 523
            STPH P         Q S   LQ AA              R    +  YRGVR+R WGK+ AEIR   +N  R+WLGTYDT E AA AYDRAA+K+RG  A+LNFP+L
Sbjct:   88 STPHPPLFSSTYDHHQTSELMLQAAAGSPAAAFAAALAAGRVTKKKKLYRGVRQRHWGKWVAEIR-LPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNL 194          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.404e-16
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQP 550
            YRGVR+R WGK+ AEIR   +N +RLWLGT+DT E AALAYD+AA+K+RG  A+LNFP L   N E QP
Sbjct:   83 YRGVRQRHWGKWVAEIR-LPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDL-RHNDEYQP 149          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            YRG+R+RPWGK+AAEIRD ++ G+R+WLGT+ T E AA AYD AA ++RGSKAK+NFP
Sbjct:  125 YRGIRQRPWGKWAAEIRDPRE-GARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFP 181          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.670e-16
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL-IASNVEPQPHG 556
            YRG+R+RPWGK+AAEIRD  K G R+WLGT+ T + AA AYD AA K+RG KAKLNFP+  +    + +P G
Sbjct:   50 YRGIRQRPWGKWAAEIRDPSK-GVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNTQVEEEADTKPGG 120          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL 523
            YRGVR+R WGK+ AEIR   +N +RLWLGT+DT E AALAYD+AA+K+RG  A+LNFP+L
Sbjct:  152 YRGVRQRHWGKWVAEIR-LPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL 210          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 2
Query:  338 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPH 553
            + +RGVRKRPWG+FAAEIRD  K  +R+WLGT+D+ E AA AYD AA  +RG KAK NFP  I S+  P P+
Sbjct:   26 IRFRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP--IDSSSPPPPN 94          
The following BLAST results are available for this feature:
BLAST of CK935270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
EF109_ARATH1.948e-1670.69Ethylene-responsive transcription factor ERF109 OS... [more]
ABR1_ARATH3.324e-1657.89Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF91_ARATH4.341e-1668.97Ethylene-responsive transcription factor ERF091 OS... [more]
ERF4_NICSY4.341e-1670.00Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF61_ARATH7.404e-1648.15Ethylene-responsive transcription factor ERF061 OS... [more]
ERF58_ARATH7.404e-1663.77Ethylene-responsive transcription factor ERF058 OS... [more]
RA212_ARATH9.670e-1667.24Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF71_ARATH9.670e-1658.33Ethylene-responsive transcription factor ERF071 OS... [more]
RAP24_ARATH1.263e-1566.67Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF82_ARATH1.649e-1559.72Ethylene-responsive transcription factor 3 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935270 ID=CK935270; Name=CK935270; organism=Citrus sinensis; type=EST; length=878bp
GGGGAAACACAGTACAGATCACTCTCAAATCCAAGAANNNACAGCAAAAT
CATAACATCATATTCCCCGGCAAATTAAATTCAAGCTTAACTTTTCGTTT
ACAGATTAAAGTTTCAGCTTCAGTGATACACATAAACTCTTGAACTCAAG
CCCTAACTCTGATTCAATCCATTGAAATATGGAGGATTGCGAAGCTTTAC
ACGACACTGTTAAGGAGGGGTGGATTTCGTTTGATCAGCTTGATGGAAAG
TCGACGCCTCATGCTCCGCCTCAGGCTCAGGCTAGTGGATTTCGTTTACA
GAAGGCAGCCACGATGACACGTGAGATTCACGTGCGTGTAAATTATCGAG
GTGTGAGGAAGAGGCCGTGGGGAAAGTTTGCTGCGGAGATAAGGGATCGT
AAAAAGAATGGCTCACGACTTTGGCTGGGGACCTATGATACGCCTGAGGG
TGCTGCGTTGGCTTATGATAGAGCCGCTTTCAAGATGCGCGGCTCAAAAG
CCAAGCTTAATTTTCCAAGCCTCATTGCCTCAAACGTTGAGCCTCAGCCT
CACGGAATTACGAAAAAGAATATGGCTTCTTCTTCGTCATCCTCATCCAT
CGCTGCAGATTAAATCTCCGAATTTGGGTTTAATTAGCTGAGAAATAATA
TTTCTACTTATTTTTGAAGTAATTGACATTAATTCGCCTTTTATTAATAT
TAATGTTGTGTGTATATATATGTATGTATGTATGATGTATCTGCCCTGCT
TCATGTATCGTTTGGGTGATTTGATGATCCGTAATTGTAACAACTGGTGC
AATTCATAACTTGACCCCAGTCCATCGATCAATGTACGTAACGATTTTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAA
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