CK935270

Overview
NameCK935270
Unique NameCK935270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935270_ssr719 microsatellite CK935270_ssr719:719..734. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6277 contig Csv1_Contig6277:19..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLI 526
            YRGVR+R WGK+ AEIR   KN +RLWLGT++T + AALAYD+AA K+RG  A+LNFP ++
Sbjct:  111 YRGVRQRQWGKWVAEIR-LPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIV 170          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  338 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            + +RGVRKRPWG+FAAEIRD  K  +R+WLGT+D+ E AA AYD AA  +RG KAK NFP
Sbjct:   26 IRFRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            YRGVRKRPWG+FAAEIRD  K  SR+WLGT+D+   AA AYD AA  +RG KAK NFP
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKK-SRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            YRGVR+R WGK+ AEIR + ++ +RLWLGT+DT E AA+AYDR AFK+RG  A LNFP
Sbjct:  143 YRGVRQRQWGKWVAEIR-KPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIA 529
            Y+G+R R WGK+ AEIR+  K  SR+WLG+Y TPE AA AYD A F +RG  A+LNFP L+A
Sbjct:   30 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLA 90          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  338 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASN 535
            + YRGVRKRPWG++AAEIRD  K  +R+WLGT+DT + AA AYD AA   RG KAK NF  ++ S+
Sbjct:   29 IRYRGVRKRPWGRYAAEIRDPVKK-TRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSS 93          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            YRGVR+R WGK+ AEIR   KN +RLWLGT+DT E AA+AYD AA+K+RG  A+LNFP
Sbjct:   93 YRGVRQRHWGKWVAEIR-LPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.824e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIA 529
            Y+G+R R WGK+ AEIR+  K  SR+WLG+Y TPE AA AYD A F +RG  A+LNFP L+A
Sbjct:   28 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLA 88          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.382e-14
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  338 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            V YRGVR+RPWG++AAEIRD  K   R+WLG+++T E AA AYD AA + RGSKA  NFP
Sbjct:   51 VRYRGVRRRPWGRYAAEIRDPVKK-KRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.382e-14
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLI 526
            Y+G+R R WGK+ AEIR+  K  SRLWLG+Y TPE AA AYD A F +RG  A+LNFP L+
Sbjct:   21 YKGIRMRKWGKWVAEIREPNKR-SRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELL 80          
The following BLAST results are available for this feature:
BLAST of CK935270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ERF57_ARATH6.268e-1562.30Ethylene-responsive transcription factor ERF057 OS... [more]
ERF3_TOBAC6.268e-1565.00Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF83_ARATH8.186e-1568.97Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF54_ARATH8.186e-1565.52Ethylene-responsive transcription factor ERF054 OS... [more]
RA210_ARATH1.069e-1459.68Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF79_ARATH1.069e-1459.09Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF60_ARATH1.069e-1467.24Ethylene-responsive transcription factor ERF060 OS... [more]
ERF08_ARATH1.824e-1459.68Ethylene-responsive transcription factor ERF008 OS... [more]
ERF77_ARATH2.382e-1463.33Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF10_ARATH2.382e-1460.66Ethylene-responsive transcription factor ERF010 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935270 ID=CK935270; Name=CK935270; organism=Citrus sinensis; type=EST; length=878bp
GGGGAAACACAGTACAGATCACTCTCAAATCCAAGAANNNACAGCAAAAT
CATAACATCATATTCCCCGGCAAATTAAATTCAAGCTTAACTTTTCGTTT
ACAGATTAAAGTTTCAGCTTCAGTGATACACATAAACTCTTGAACTCAAG
CCCTAACTCTGATTCAATCCATTGAAATATGGAGGATTGCGAAGCTTTAC
ACGACACTGTTAAGGAGGGGTGGATTTCGTTTGATCAGCTTGATGGAAAG
TCGACGCCTCATGCTCCGCCTCAGGCTCAGGCTAGTGGATTTCGTTTACA
GAAGGCAGCCACGATGACACGTGAGATTCACGTGCGTGTAAATTATCGAG
GTGTGAGGAAGAGGCCGTGGGGAAAGTTTGCTGCGGAGATAAGGGATCGT
AAAAAGAATGGCTCACGACTTTGGCTGGGGACCTATGATACGCCTGAGGG
TGCTGCGTTGGCTTATGATAGAGCCGCTTTCAAGATGCGCGGCTCAAAAG
CCAAGCTTAATTTTCCAAGCCTCATTGCCTCAAACGTTGAGCCTCAGCCT
CACGGAATTACGAAAAAGAATATGGCTTCTTCTTCGTCATCCTCATCCAT
CGCTGCAGATTAAATCTCCGAATTTGGGTTTAATTAGCTGAGAAATAATA
TTTCTACTTATTTTTGAAGTAATTGACATTAATTCGCCTTTTATTAATAT
TAATGTTGTGTGTATATATATGTATGTATGTATGATGTATCTGCCCTGCT
TCATGTATCGTTTGGGTGATTTGATGATCCGTAATTGTAACAACTGGTGC
AATTCATAACTTGACCCCAGTCCATCGATCAATGTACGTAACGATTTTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAA
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