CK935270

Overview
NameCK935270
Unique NameCK935270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935270_ssr719 microsatellite CK935270_ssr719:719..734. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6277 contig Csv1_Contig6277:19..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.382e-14
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF-PSLIASNVE 541
            +RGVR+RPWGK+AAEIRD  +   R+WLGT+DT E AA+ YD AA ++RG  A+LNF P  +  NVE
Sbjct:   87 FRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVTENVE 152          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.111e-14
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 520
            Y+G+R+RPWG++AAEIRD  K G R+WLGT++T E AA AYD  A ++RG+KAKLNFP+
Sbjct:   25 YKGIRRRPWGRWAAEIRDPIK-GVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPN 82          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.063e-14
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  248 KSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 514
            K+   +P  A  +G  L K+          V YRGVR+RPWGKFAAEIRD     +RLWLGT+ T E AA+ YDRAA +++G  A+ NF
Sbjct:   76 KAKKKSPAAAAENGGDLVKSV---------VKYRGVRQRPWGKFAAEIRDPSSR-TRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.306e-14
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEP 544
            YRGVRKR WGK+ +EIR+     +R+WLG+++TPE AA AYD AAF  RG +A+LNFP L +S   P
Sbjct:   24 YRGVRKRKWGKWVSEIREPGTK-NRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASSLPRP 89          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.306e-14
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            +RG+R+RPWGK+AAEIRD +K G R+WLGT+++ E AA AYD  A ++RG KAK+NFP
Sbjct:  120 FRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.930e-14
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF---PSLIASNVEPQPHGITKK 568
            +RGVR+RPWGK+AAEIRD  K   RLWLGTY+T E AA+ YD AA ++RG  A  NF   P+       P P  + KK
Sbjct:  122 FRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEKKAPPPSPVKKK 198          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 514
            YRGVR+RPWGKFAAEIRD     +R+WLGT+ T E AA+AYDRAA  ++G KA  NF
Sbjct:  105 YRGVRQRPWGKFAAEIRDPSSR-TRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLI 526
            ++G+R R WGK+ AEIR+  K  SRLWLG+Y TPE AA AYD A F +RG  A LNFP L+
Sbjct:   21 FKGIRMRKWGKWVAEIREPNKR-SRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELL 80          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.633e-13
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 568
            YRGVR+RPWGK+AAEIRD ++   R+WLGT+ T E AA+ YD AA K+RG  A  NF       V+P+P  + ++
Sbjct:  117 YRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF------TVQPEPEPVQEQ 184          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKNM 574
            YRGVRKR WGK+ +EIR+ +K  SR+WLGT+ +PE AA A+D AA  ++G+ A LNFP L  S   P+P  ++ +++
Sbjct:   36 YRGVRKRNWGKWVSEIREPRKK-SRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGS--FPRPSSLSPRDI 109          
The following BLAST results are available for this feature:
BLAST of CK935270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
CRF1_ARATH2.382e-1458.21Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF73_ARATH3.111e-1462.71Ethylene-responsive transcription factor ERF073 OS... [more]
CRF5_ARATH4.063e-1448.31Ethylene-responsive transcription factor CRF5 OS=A... [more]
ERF21_ARATH5.306e-1456.72Ethylene-responsive transcription factor ERF021 OS... [more]
ERF1_ORYSJ5.306e-1462.07Ethylene-responsive transcription factor 1 OS=Oryz... [more]
CRF2_ARATH6.930e-1452.56Ethylene-responsive transcription factor CRF2 OS=A... [more]
CRF6_ARATH1.182e-1364.91Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF11_ARATH1.544e-1359.02Ethylene-responsive transcription factor ERF011 OS... [more]
CRF4_ARATH2.633e-1350.67Ethylene-responsive transcription factor CRF4 OS=A... [more]
TINY_ARATH3.439e-1349.35Ethylene-responsive transcription factor TINY OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935270 ID=CK935270; Name=CK935270; organism=Citrus sinensis; type=EST; length=878bp
GGGGAAACACAGTACAGATCACTCTCAAATCCAAGAANNNACAGCAAAAT
CATAACATCATATTCCCCGGCAAATTAAATTCAAGCTTAACTTTTCGTTT
ACAGATTAAAGTTTCAGCTTCAGTGATACACATAAACTCTTGAACTCAAG
CCCTAACTCTGATTCAATCCATTGAAATATGGAGGATTGCGAAGCTTTAC
ACGACACTGTTAAGGAGGGGTGGATTTCGTTTGATCAGCTTGATGGAAAG
TCGACGCCTCATGCTCCGCCTCAGGCTCAGGCTAGTGGATTTCGTTTACA
GAAGGCAGCCACGATGACACGTGAGATTCACGTGCGTGTAAATTATCGAG
GTGTGAGGAAGAGGCCGTGGGGAAAGTTTGCTGCGGAGATAAGGGATCGT
AAAAAGAATGGCTCACGACTTTGGCTGGGGACCTATGATACGCCTGAGGG
TGCTGCGTTGGCTTATGATAGAGCCGCTTTCAAGATGCGCGGCTCAAAAG
CCAAGCTTAATTTTCCAAGCCTCATTGCCTCAAACGTTGAGCCTCAGCCT
CACGGAATTACGAAAAAGAATATGGCTTCTTCTTCGTCATCCTCATCCAT
CGCTGCAGATTAAATCTCCGAATTTGGGTTTAATTAGCTGAGAAATAATA
TTTCTACTTATTTTTGAAGTAATTGACATTAATTCGCCTTTTATTAATAT
TAATGTTGTGTGTATATATATGTATGTATGTATGATGTATCTGCCCTGCT
TCATGTATCGTTTGGGTGATTTGATGATCCGTAATTGTAACAACTGGTGC
AATTCATAACTTGACCCCAGTCCATCGATCAATGTACGTAACGATTTTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAA
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