CK935270

Overview
NameCK935270
Unique NameCK935270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935270_ssr719 microsatellite CK935270_ssr719:719..734. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6277 contig Csv1_Contig6277:19..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  326 IHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLI 526
            +  R  YRG+R+R WGK+ AEIR+  K  SRLWLG+Y T   AA AYD A F +RG  A+LNFP L+
Sbjct:   25 VATRKPYRGIRRRKWGKWVAEIREPNKR-SRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLL 90          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  332 VRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 514
            V   + GVR+RPWG++AAEIRD      R WLGT+DT E AALAYDRAA  MRG++A+ NF
Sbjct:   16 VGTRFLGVRRRPWGRYAAEIRDPTTK-ERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  335 RVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQ 547
            +++YRG+R+R WGK+ +EIR+  K  +R+WLG+Y+T E AA AYD AA  +RG    LNFP L+ S   P+
Sbjct:   17 QLSYRGIRRRKWGKWVSEIREPGKK-TRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELVDSFPRPE 86          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  338 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 514
            + YRGVR+RPWG++AAEIRD      R WLGT+DT E AA AYD AA  MRG KA+ NF
Sbjct:   56 IRYRGVRRRPWGRYAAEIRDPLSK-ERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.867e-13
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKNM 574
            Y GVRKR WGK+ +EIR+ +K  SR+WLG++  PE AA AYD AAF ++G KA+LNFP  I     P+P   T +++
Sbjct:   45 YHGVRKRRWGKWVSEIREPRKK-SRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIED--LPRPSTCTPRDI 118          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: DRE2B_ARATH (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.867e-13
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 532
            ++RGVR+R WGK+ AEIR+  K G+RLWLGT+ T E AA AYD AA  M GS A+LNFP  + S
Sbjct:   77 SFRGVRQRIWGKWVAEIRE-PKIGTRLWLGTFPTAEKAASAYDEAATAMYGSLARLNFPQSVGS 139          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 514
            YRGVR+RPWG++AAEIRD      R WLGT+DT E AA AYD AA   RG+KA+ NF
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSK-ERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL 523
            YRGVR+R WGK+ AEIR   +N +R+WLGT++T E AA+AYD AA+ +RG  A LNFP L
Sbjct:  232 YRGVRQRHWGKWVAEIR-LPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPDL 290          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 520
            YRGVRKR WGK+ +EIR   K G R+WLG+YD PE AA AYD A F +RG K   NFP+
Sbjct:   27 YRGVRKRSWGKWVSEIRV-PKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPT 84          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF69_ARATH (Ethylene-responsive transcription factor ERF069 OS=Arabidopsis thaliana GN=ERF069 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.001e-12
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  266 PPQAQASGFRLQKAATMTREIHVRVN---YRGVRKRPWGKFAAEIRDRKKNG--SRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 514
            PP+   + F+++  A++    +   N   +RGVR+RPWGK+AAEIR  +  G   R+WLGT++T E AALAYD AA ++ G  A  NF
Sbjct:   46 PPEVGKTRFKIRIPASLLAARNTTANKKKFRGVRQRPWGKWAAEIRCGRVKGRPERIWLGTFETAEEAALAYDNAAIQLIGPDAPTNF 133          
The following BLAST results are available for this feature:
BLAST of CK935270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RAP21_ARATH3.439e-1355.22Ethylene-responsive transcription factor RAP2-1 OS... [more]
LEP_ARATH3.439e-1360.66Ethylene-responsive transcription factor LEP OS=Ar... [more]
ERF22_ARATH3.439e-1349.30Ethylene-responsive transcription factor ERF022 OS... [more]
ESR2_ARATH4.492e-1362.71Ethylene-responsive transcription factor ESR2 OS=A... [more]
ERF23_ARATH5.867e-1350.65Ethylene-responsive transcription factor ERF023 OS... [more]
DRE2B_ARATH5.867e-1359.38Dehydration-responsive element-binding protein 2B ... [more]
ESR1_ARATH7.662e-1363.16Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF62_ARATH7.662e-1360.00Ethylene-responsive transcription factor ERF062 OS... [more]
ERF15_ARATH7.662e-1361.02Ethylene-responsive transcription factor ERF015 OS... [more]
ERF69_ARATH1.001e-1244.32Ethylene-responsive transcription factor ERF069 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935270 ID=CK935270; Name=CK935270; organism=Citrus sinensis; type=EST; length=878bp
GGGGAAACACAGTACAGATCACTCTCAAATCCAAGAANNNACAGCAAAAT
CATAACATCATATTCCCCGGCAAATTAAATTCAAGCTTAACTTTTCGTTT
ACAGATTAAAGTTTCAGCTTCAGTGATACACATAAACTCTTGAACTCAAG
CCCTAACTCTGATTCAATCCATTGAAATATGGAGGATTGCGAAGCTTTAC
ACGACACTGTTAAGGAGGGGTGGATTTCGTTTGATCAGCTTGATGGAAAG
TCGACGCCTCATGCTCCGCCTCAGGCTCAGGCTAGTGGATTTCGTTTACA
GAAGGCAGCCACGATGACACGTGAGATTCACGTGCGTGTAAATTATCGAG
GTGTGAGGAAGAGGCCGTGGGGAAAGTTTGCTGCGGAGATAAGGGATCGT
AAAAAGAATGGCTCACGACTTTGGCTGGGGACCTATGATACGCCTGAGGG
TGCTGCGTTGGCTTATGATAGAGCCGCTTTCAAGATGCGCGGCTCAAAAG
CCAAGCTTAATTTTCCAAGCCTCATTGCCTCAAACGTTGAGCCTCAGCCT
CACGGAATTACGAAAAAGAATATGGCTTCTTCTTCGTCATCCTCATCCAT
CGCTGCAGATTAAATCTCCGAATTTGGGTTTAATTAGCTGAGAAATAATA
TTTCTACTTATTTTTGAAGTAATTGACATTAATTCGCCTTTTATTAATAT
TAATGTTGTGTGTATATATATGTATGTATGTATGATGTATCTGCCCTGCT
TCATGTATCGTTTGGGTGATTTGATGATCCGTAATTGTAACAACTGGTGC
AATTCATAACTTGACCCCAGTCCATCGATCAATGTACGTAACGATTTTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAA
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