CK935270

Overview
NameCK935270
Unique NameCK935270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.803e-12
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKNM 574
            +YRGVR R WGK+ +EIR+ +K  SR+WLGTY T E AA A+D AA  ++G+   LNFP L  S + P+P   + K++
Sbjct:   70 SYRGVRMRSWGKWVSEIREPRKK-SRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPEL--SGLLPRPVSCSPKDI 144          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.966e-12
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL 523
            N+RGVR R WGK+ +EIR+ KK  SR+WLGT+ T E AA A+D AA  ++G  A LNFP L
Sbjct:   44 NFRGVRMRQWGKWVSEIREPKKK-SRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPEL 103          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.966e-12
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            Y+GVRKR WGK+ +EIR    +  R+WLG+YDTPE AA A+D A + +RG+ AK NFP
Sbjct:   12 YKGVRKRKWGKWVSEIR-LPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFP 68          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.471e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEP 544
            YRGVR R WGK+ +EIR+ +K  SR+WLGTY T E AA A+D AA  ++G+ A LNFP L      P
Sbjct:  100 YRGVRMRSWGKWVSEIREPRKK-SRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGELPRP 165          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.471e-12
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  320 REIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 520
            R   ++  Y+GVRKR WGK+ +EIR    +  R+WLG+YDTPE AA A+D A F +RG  A  NFP+
Sbjct:   13 RNTAMQSKYKGVRKRKWGKWVSEIR-LPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPN 78          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.106e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            Y+G+R R WGK+ AEIR+  K  SR+WLG+Y T   AA AYD A F +RG  A+LNFP
Sbjct:   36 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFP 92          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF70_ARATH (Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.106e-11
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  290 FRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDR----KKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVE 541
            F+++  A   +       YRGVR+RPWGK+ AEIR      K    RLWLGT++T E AALAYD A+ K+ G  A  NF  L A N E
Sbjct:   61 FKIRIPAEFLKTAKTEKKYRGVRQRPWGKWVAEIRCGRGACKGRRDRLWLGTFNTAEEAALAYDNASIKLIGPHAPTNF-GLPAENQE 147          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.106e-11
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKNM 574
            YRG R R WGK+ +EIR+ +K  SR+WLGT+ T E AA A+D AA  ++GS A LNFP L  ++  P+P  ++++++
Sbjct:   26 YRGARMRSWGKWVSEIREPRKK-SRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPEL--ADFLPRPVSLSQQDI 99          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.445e-11
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKNM 574
            YRGVR R WGK+ +EIR+ +K  SR+WLGT+ T E A  A+D AA  ++G+ A LNFP L  S + P+P  ++ +++
Sbjct:   19 YRGVRMRSWGKWVSEIREPRKK-SRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPEL--SKLLPRPVSLSPRDV 92          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.445e-11
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  335 RVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF----PSLIASN 535
            +  YRGVR+R WGK+ AEIR+ +K  +R WLGT+ T E AA AYDRAA  + GS+A+LN     PS ++S+
Sbjct:   52 KFRYRGVRQRSWGKWVAEIREPRKR-TRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTPSSPSSVSSS 121          
The following BLAST results are available for this feature:
BLAST of CK935270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ERF35_ARATH3.803e-1248.72Ethylene-responsive transcription factor ERF035 OS... [more]
ERF38_ARATH4.966e-1257.38Ethylene-responsive transcription factor ERF038 OS... [more]
ERF17_ARATH4.966e-1256.90Ethylene-responsive transcription factor ERF017 OS... [more]
ERF34_ARATH8.471e-1253.73Ethylene-responsive transcription factor ERF034 OS... [more]
ERF18_ARATH8.471e-1250.75Ethylene-responsive transcription factor ERF018 OS... [more]
RAP29_ARATH1.106e-1156.90Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF70_ARATH1.106e-1146.59Ethylene-responsive transcription factor ERF070 OS... [more]
ERF42_ARATH1.106e-1146.75Ethylene-responsive transcription factor ERF042 OS... [more]
ERF43_ARATH1.445e-1146.75Ethylene-responsive transcription factor ERF043 OS... [more]
ABI4_ARATH1.445e-1152.11Ethylene-responsive transcription factor ABI4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935270 ID=CK935270; Name=CK935270; organism=Citrus sinensis; type=EST; length=878bp
GGGGAAACACAGTACAGATCACTCTCAAATCCAAGAANNNACAGCAAAAT
CATAACATCATATTCCCCGGCAAATTAAATTCAAGCTTAACTTTTCGTTT
ACAGATTAAAGTTTCAGCTTCAGTGATACACATAAACTCTTGAACTCAAG
CCCTAACTCTGATTCAATCCATTGAAATATGGAGGATTGCGAAGCTTTAC
ACGACACTGTTAAGGAGGGGTGGATTTCGTTTGATCAGCTTGATGGAAAG
TCGACGCCTCATGCTCCGCCTCAGGCTCAGGCTAGTGGATTTCGTTTACA
GAAGGCAGCCACGATGACACGTGAGATTCACGTGCGTGTAAATTATCGAG
GTGTGAGGAAGAGGCCGTGGGGAAAGTTTGCTGCGGAGATAAGGGATCGT
AAAAAGAATGGCTCACGACTTTGGCTGGGGACCTATGATACGCCTGAGGG
TGCTGCGTTGGCTTATGATAGAGCCGCTTTCAAGATGCGCGGCTCAAAAG
CCAAGCTTAATTTTCCAAGCCTCATTGCCTCAAACGTTGAGCCTCAGCCT
CACGGAATTACGAAAAAGAATATGGCTTCTTCTTCGTCATCCTCATCCAT
CGCTGCAGATTAAATCTCCGAATTTGGGTTTAATTAGCTGAGAAATAATA
TTTCTACTTATTTTTGAAGTAATTGACATTAATTCGCCTTTTATTAATAT
TAATGTTGTGTGTATATATATGTATGTATGTATGATGTATCTGCCCTGCT
TCATGTATCGTTTGGGTGATTTGATGATCCGTAATTGTAACAACTGGTGC
AATTCATAACTTGACCCCAGTCCATCGATCAATGTACGTAACGATTTTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAA
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