CK935329

Overview
NameCK935329
Unique NameCK935329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7080 contig Csv1_Contig7080:1127..1876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 60/173 (34.68%), Postives = 92/173 (53.18%), Query Frame = 1
Query:   28 ENFSNELYEMRFNLKTGLASQKRLSASAVDFP----RVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQA 534
            E  ++ L E+R NLKTG ++++ +   +V        VN    GRK RY Y  I +   KV+G  K DL              G V+  F  G  ++G E  F+PR   +  E+D GY++ F HDE++ +S +++++A T+  +  A V+LP RVPYGFH  FV+   +  QA
Sbjct:  433 EQLNSVLSEIRLNLKTGKSTRRTIIPGSVQMNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLST------------GEVKNHF-YGGKKYGGEPFFLPRGLESDGEDD-GYIMSFVHDEESWESELHIVNAVTLELE--ATVKLPSRVPYGFHGTFVNSADMLNQA 589          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.902e-17
Identity = 55/173 (31.79%), Postives = 92/173 (53.18%), Query Frame = 1
Query:   28 ENFSNELYEMRFNLKTGLASQKRLSASA----VDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQA 534
            E+  + L E+R NL+TG ++++ + + A    ++   VN    GRK ++ Y  + +   KV+G  K DL +            G V+  +  G  +FG E +F+P       EE  GY++ F HDEK  KS + +++A+ +  +  A ++LP RVPYGFH  F+  + L +QA
Sbjct:  462 ESLKSVLSEIRLNLRTGKSTRRPIISDAEQVNLEAGMVNRNKLGRKTQFAYLALAEPWPKVSGFAKVDLFS------------GEVQK-YMYGEEKFGGEPLFLPN----GEEEGDGYILAFVHDEKEWKSELQIVNAQNLKLE--ASIKLPSRVPYGFHGTFIHSKDLRKQA 615          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.332e-15
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 1
Query:   19 EKLENFSNELYEMRFNLKTGLASQKRLSASA---VDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSE-EDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQ 531
            E+ E+  + L E+R NL+T   +++ L  +    ++   VN    GRK R+ +  I     KV+G  K DL      E  K   GG           ++G E  F+P   G   E ED GY+    HDE+T  S + +I+A  +  +  A ++LP RVPYGFH  FV   +L +Q
Sbjct:  423 ERDESLRSVLSEIRINLRTRKTTRRSLLVNEDVNLEIGMVNRNRLGRKTRFAFLAIAYPWPKVSGFAKVDLCTG---EMKKYIYGGE----------KYGGEPFFLPGNSGNGEENEDDGYIFCHVHDEETKTSELQIINAVNLKLE--ATIKLPSRVPYGFHGTFVDSNELVDQ 582          
The following BLAST results are available for this feature:
BLAST of CK935329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NCED5_ARATH1.622e-1834.68Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_PHAVU8.902e-1731.799-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED2_ARATH8.332e-1532.579-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_A04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935329 ID=CK935329; Name=CK935329; organism=Citrus sinensis; type=EST; length=750bp
GGGAATGGGGCTGTCAAAGAAAAGCTAGAAAATTTCTCAAATGAACTGTA
TGAGATGAGATTCAACTTGAAAACTGGCCTAGCTTCACAAAAGAGATTAT
CGGCATCCGCTGTTGATTTTCCTAGGGTGAATGAGTGCTACACTGGCAGG
AAGCAAAGATATGTGTATGGAACAATACTAGATAGCATTGTAAAAGTCAC
AGGGATCATCAAATTTGATCTGCATGCTGAACCAGACGAAGAGAAAACAA
AGCTTGAAGTTGGAGGAAATGTGAGAGGCATCTTTGATCTGGGCCCTGGA
AGATTTGGTTCAGAGGCTGTTTTTGTTCCTAGAGAGCCTGGCACCTCTTC
TGAAGAAGATGTTGGTTACTTAATATTCTTCTCTCATGATGAGAAAACCG
GAAAGTCATCAGTGAACGTGATTGATGCAAAAACAATGTCAGCTGATCCT
GTTGCAGTTGTCGAATTACCACAAAGGGTTCCATACGGATTTCATGCCTT
CTTTGTGTCAGAGGAACAACTTGAAGAGCAAGCAAAATTGTGATCGTGGG
CAGAGACCTTGTGACAAGTAAAAGCAGAGCGATAAATAGAATAAATCTAA
AATCTCTTCCGCGAGCTGCGTTGGGTTTGTGGGTTATGTCATTATGTAGA
GCATTAGAACTCTGATGTAACAAGAAAAATATATTTGAGTTTTGTAATTA
ATTTTGCCACCAAGTTATCTCACCCCAAGAAGTTATTTTATCTGTTTTTT
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