CK935336

Overview
NameCK935336
Unique NameCK935336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:98..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 31/92 (33.70%), Postives = 58/92 (63.04%), Query Frame = 2 
Query:  173 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 448
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ G+   EL + + +H+++ S
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGS 122
[Close]
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 37/120 (30.83%), Postives = 71/120 (59.17%), Query Frame = 2 
Query:  101 AAEEGQ----VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLATAS 448
            AAE G+    V+   + + + E L+   +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ G+   EL + + +H+++ +
Sbjct:    5 AAEAGEAAVAVVEVGSAQQFEELLRL--KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGA 122
The following BLAST results are available for this feature:
BLAST of CK935336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
GLRX3_RAT7.813e-1133.70Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
GLRX3_MOUSE7.813e-1130.83Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935336 ID=CK935336; Name=CK935336; organism=Citrus sinensis; type=EST; length=673bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAGCCGCGGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
GAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGTGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAG
AAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGC
CTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGAC
CTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGA
TTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAG
CTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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