CK935336

Overview
NameCK935336
Unique NameCK935336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:98..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.208e-20
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTI 424
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V  MPTF F K+G+ VD+  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTI 424
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V  MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  140 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTIAK 430
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V  MPTF F K+G+ V +  G+ KE+L+ TI +
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITE 103          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTI 424
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V  MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.968e-19
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTI 424
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA +  V  MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 7.795e-19
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 2
Query:  140 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKH 433
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD+ + VA D  V  MPTF F K+G+ V +  G+ KE+L+ +I ++
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 7.795e-19
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  140 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTI 424
            +A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V  MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTI 424
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V  MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTI 424
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD+ + VA++  V  MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  143 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTI 424
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+F++VDVD+ K +A +  V  MPTF F K+G+ V +  G+ KE+L+ TI
Sbjct:   10 AFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CK935336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
THIO_HORSE9.208e-2050.00Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_SHEEP4.570e-1948.94Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_RAT4.570e-1948.45Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_PIG4.570e-1948.94Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_BOVIN5.968e-1948.94Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE7.795e-1946.94Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_CALJA7.795e-1947.37Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN1.018e-1847.87Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_MACMU1.330e-1847.87Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_RABIT1.736e-1846.81Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935336 ID=CK935336; Name=CK935336; organism=Citrus sinensis; type=EST; length=673bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAGCCGCGGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
GAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGTGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAG
AAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGC
CTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGAC
CTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGA
TTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAG
CTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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