CK935336

Overview
NameCK935336
Unique NameCK935336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:98..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 42/93 (45.16%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  167 SNETKQ-LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKHL 436
            S ET + +V+ DF A WCGPC+ IAP L EL +++ + L  +K+DVDE +  A  + V+++PT + LK+G++V+  VG K KE LQ+ + KHL
Sbjct:   12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  188 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTI 424
            +V+DF A+WCGPC+ + P L +L +  P+V F+K DVDE   +A +  V AMPTF+  K+G+++ K++G+    L++ I
Sbjct:   46 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 124          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  119 VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKL--PNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTIA 427
            VI   + + W   + KS      + VD  A WCGPC+ I+P  ++LA K   P  +F KV+VDE + +A+   V AMPTF+F + GK +D + G+  + L++ +A
Sbjct:    3 VIEIRSYQHWISTIPKSG----YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + I KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  122 IGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQ 415
            +G   +++  E  +K  +    VVVDF A+WCGPC+ IAP L +L++    + F KVDVDEL  VA    V AMPTF F K G+  ++V G+    +Q
Sbjct:    1 MGVTPIKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQ 98          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  185 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSK-KEELQQTIAKH 433
            LV+VDF A WCGPC+ + P L  LA +LP V  LK+D+D     A  + V ++PT +  K+GK V++ VG K K+ L + I+KH
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CK935336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
THIO_BACSU1.521e-1445.16Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
TRX3_YEAST1.987e-1441.77Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
TXL1_SCHPO7.550e-1437.14Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
THIO_STAS17.550e-1450.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_PENCH7.550e-1441.84Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_CHLMU7.550e-1445.24Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_STAAW9.860e-1448.81Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU9.860e-1448.81Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS9.860e-1448.81Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR9.860e-1448.81Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935336 ID=CK935336; Name=CK935336; organism=Citrus sinensis; type=EST; length=673bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAGCCGCGGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
GAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGTGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAG
AAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGC
CTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGAC
CTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGA
TTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAG
CTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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