CK935336

Overview
NameCK935336
Unique NameCK935336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:98..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  191 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVG-SKKEELQQTIAKHL 436
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V+++PT +  K+G+ VDKVVG   KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  149 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVVAMPTFMFLKEGKIV 379
            N++LQK   +   VVVDF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQV 87          
BLAST of CK935336 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  161 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVVAMPTFMFLKEGKIVDKVVGSKKEELQQTIAKHLA 439
            +K    K  VVVD  A+WCGPC+ IAP + + A+   +  F ++DVDEL  VA +  + AMPTF+  K+G+ V  VVG+    L+  I   LA
Sbjct:   18 EKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKALLA 110          
The following BLAST results are available for this feature:
BLAST of CK935336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
THIO_STAAN9.860e-1448.81Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM9.860e-1448.81Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC9.860e-1448.81Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB9.860e-1448.81Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA89.860e-1448.81Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA39.860e-1448.81Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_STAES1.288e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ1.288e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_FUSCU1.288e-1350.00Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO_EMENI1.288e-1341.94Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004562_H05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935336 ID=CK935336; Name=CK935336; organism=Citrus sinensis; type=EST; length=673bp
GGGGATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGT
ATCGTTGGGTGGAGTAGTGGTGGTAATAGCCGCGGAAAGCAGAAATGGCA
GCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAA
CGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATT
TCACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCA
GAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGA
TGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGTGGCCATGCCAACTT
TCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGATCAAAG
AAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCCTCTGC
CTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGAC
CTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGA
TTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAG
CTCATACTGTGGTCTTTACAATAATTTAATTTCATATTTGGGGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
back to top