CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB2_ANEPH (Tubulin beta-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 4.071e-109
Identity = 190/213 (89.20%), Postives = 194/213 (91.08%), Query Frame = 1
Query:  202 TGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            TG Y GD++ QLERVNVYYNEASCGR+VPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMM TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+FGDLNHLISATMSGVTCCLRFPGQ
Sbjct:    1 TGTYRGDSETQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMXTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLVTPTFGDLNHLISATMSGVTCCLRFPGQ 213          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 9.069e-109
Identity = 183/245 (74.69%), Postives = 208/245 (84.90%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            MREI+H+Q GQCGNQIGA FW+ +  EHG+D +G YNG +DLQLER NVY+NEAS  ++VPRAVL+DLEPGTMD+VR+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALY+IC RTLKL+ PS+GDLNHL+SA MSGVT CLRFPGQ
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQLERTNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYEICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQ 245          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB_MYCGR (Tubulin beta chain OS=Mycosphaerella graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 1.184e-108
Identity = 183/245 (74.69%), Postives = 207/245 (84.49%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            MREI+H+Q GQCGNQIGA FW+ +  EHG+D +G YNG +DLQLER+NVY+NEAS  ++VPRAVL+DLEPGTMD+VR+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVEN+D    +DNEALYDIC RTLKL  PS+GDLNHL+SA MSGVT CLRFPGQ
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVMPSPKVSDTVVEPYNATLSVHQLVENSDATFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQ 245          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB2_ERYPI (Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2 SV=2)

HSP 1 Score: 392.889 bits (1008), Expect = 1.184e-108
Identity = 183/245 (74.69%), Postives = 209/245 (85.31%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            MREI+H+Q GQCGNQIGA FW+ +  EHG+D +G YNG +DLQLER+NVY+NEAS  ++VPRAVL+DLEPGTMD+VR+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALY+IC RTLKL+ PS+GDLNHL+SA MSGVT CLRFPGQ
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNGTSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEACDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYEICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQ 245          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB_ASPOR (Tubulin beta chain OS=Aspergillus oryzae GN=benA56 PE=3 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.547e-108
Identity = 182/245 (74.29%), Postives = 209/245 (85.31%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            MREI+H+Q GQCGNQIGA FW+ +  EHG+D +G YNG +DLQLER+NVY+NEAS  ++VPRAVL+DLEPGTMD+VR+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D V+DVVR+EAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVE++DE   +DNEALYDIC RTLKL+ PS+GDLNHL+SA MSGVT CLRFPGQ
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNGSSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVVDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQ 245          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 2.020e-108
Identity = 186/245 (75.92%), Postives = 205/245 (83.67%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            MREI+H+Q GQC NQIGAKFWEVV  EHGI+  G Y G+NDLQLER++VYYNE    ++VPRAVL+DLEPGTMDSVRSGP G +FRPDNFVFGQSG GNNWAKGHYTEGAEL+D+VLDVVRKEAE  DCLQGFQ+ H              ISKIREEYPDRMM T+SV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDICFRTLKLTTP++GDLNHLIS  MSG+T CLRFPGQ
Sbjct:    1 MREIVHLQTGQCRNQIGAKFWEVVSDEHGIEPDGLYKGNNDLQLERISVYYNEVGANKYVPRAVLVDLEPGTMDSVRSGPLGSLFRPDNFVFGQSGGGNNWAKGHYTEGAELVDAVLDVVRKEAEGTDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMCTYSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTTPTYGDLNHLISIVMSGITTCLRFPGQ 245          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 2.020e-108
Identity = 183/245 (74.69%), Postives = 209/245 (85.31%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            MREI+H+Q GQCGNQIGA FW+ +  EHG+DS G YNG ++LQLER++VY+NEAS  ++VPRAVL+DLEPGTMD+VR+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDIC RTLKL+ PS+GDLNHL+SA MSGVT CLRFPGQ
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNGVYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEACDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQ 245          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1)

HSP 1 Score: 391.734 bits (1005), Expect = 2.639e-108
Identity = 182/245 (74.29%), Postives = 206/245 (84.08%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            MREI+H+Q GQCGNQ+G KFWE +  EHGID TGRY G +D QLER+NVYYNEAS  ++VPRAVL+DLEPGTMD+VR GP+G++FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV+DVVRKEAE+ DCLQGFQ+ H              +SKIRE++PDRM+ TFSV PSPKVSDTVVEPYNATLS+HQLVENADE   +DNEALYDICFRTLKL  P +GDLNHL+S  MSGVT CLRFPGQ
Sbjct:    1 MREIIHLQTGQCGNQVGCKFWETISGEHGIDQTGRYVGTSDNQLERINVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSLGGGTGAGMGTLLLSKIREDFPDRMICTFSVVPSPKVSDTVVEPYNATLSIHQLVENADETFCIDNEALYDICFRTLKLNNPGYGDLNHLVSLVMSGVTTCLRFPGQ 245          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 391.734 bits (1005), Expect = 2.639e-108
Identity = 183/245 (74.69%), Postives = 209/245 (85.31%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            MREI+H+Q GQCGNQIGA FW+ +  EHG+DS G YNG ++LQLER++VY+NEAS  ++VPRAVL+DLEPGTMD+VR+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDIC RTLKL+ PS+GDLNHL+SA MSGVT CLRFPGQ
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQNISGEHGLDSNGVYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQ 245          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 391.734 bits (1005), Expect = 2.639e-108
Identity = 183/245 (74.69%), Postives = 209/245 (85.31%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            MREI+H+Q GQCGNQIGA FW+ +  EHG+DS G YNG ++LQLER++VY+NEAS  ++VPRAVL+DLEPGTMD+VR+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D VLDVVR+EAE CDCLQGFQ+ H              ISKIREE+PDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDIC RTLKL+ PS+GDLNHL+SA MSGVT CLRFPGQ
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQNISGEHGLDSNGVYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQ 245          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBB2_ANEPH4.071e-10989.20Tubulin beta-2 chain (Fragment) OS=Anemia phylliti... [more]
TBB_UNCNE9.069e-10974.69Tubulin beta chain OS=Uncinula necator PE=3 SV=1[more]
TBB_MYCGR1.184e-10874.69Tubulin beta chain OS=Mycosphaerella graminicola G... [more]
TBB2_ERYPI1.184e-10874.69Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2... [more]
TBB_ASPOR1.547e-10874.29Tubulin beta chain OS=Aspergillus oryzae GN=benA56... [more]
TBB_PLESA2.020e-10875.92Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]
TBB_PESMI2.020e-10874.69Tubulin beta chain OS=Pestalotiopsis microspora GN... [more]
TBB_ENCCU2.639e-10874.29Tubulin beta chain OS=Encephalitozoon cuniculi GN=... [more]
TBB2_COLGR2.639e-10874.69Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBB2_COLGL2.639e-10874.69Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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