CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.422e-53
Identity = 104/247 (42.11%), Postives = 147/247 (59.51%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL---ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G QIG   WE+   EHGI   G             E  + +++E   G+FVPRA+ +DLEP  +D VR+GPY  +F P+  + G+  A NN+A+GHYT G E++  VLD +RK A+ CD LQGF   H              + ++  EY  +  L F+V+P+P+VS +VVEPYN  L+ H  +E+AD   ++DNEA+YD+C R L +  PSF +LN+LI+  +S VT  LRF G
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.857e-53
Identity = 103/246 (41.87%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G Q+G   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPR V +DLEP   D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+ C  LQGF V +              + ++  +Y  +  L F+V+PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  P++ +LN LI+  +S +T  LRF G
Sbjct:    1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVDDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.857e-53
Identity = 102/246 (41.46%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G Q+G   WE+ C EHGI   G+   DN      +  N +++E   G+ VPRAV +DLEP   D VR+G Y Q++ P+  + G+  A NN+A+GHYT G E++D VLD +RK ++NC  LQGF V H              + ++  +Y  +  L+F++ P+P+V+  VVEPYN+ LS H L+E+ D    LDNEALYD+C R L +  P++ +LN L++  +S +T  LRF G
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPNGQMPADNTTGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGSYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDIVLDRIRKLSDNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLVAQVISSLTASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.857e-53
Identity = 101/246 (41.06%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G Q+G   WE+ C EHGI    +   D  + +  +  N +++E   G+ VPRAV +DLEP  +D VRSG Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+V+P+P+V+  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PS+ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISIHVGQAGVQMGNAVWELYCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.857e-53
Identity = 103/246 (41.87%), Postives = 150/246 (60.98%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G Q+G   WE+ C EHGI   G+   D  +    +    +++E   G+ VPRA+ +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V                + ++  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T  LRF G
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFYTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.426e-53
Identity = 103/246 (41.87%), Postives = 147/246 (59.76%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G Q+G   WE+ C EHGI   G+   D   +   +  N +++E   G+ VPR V +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E+ID  LD +RK A+NC  LQGF +                + ++  +Y  +  L F  +PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  P++ +LN LI+  +S +T  LRF G
Sbjct:    1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKASRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_LEPDS (Tubulin alpha chain OS=Lepidoglyphus destructor PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.426e-53
Identity = 101/246 (41.06%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + +  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+V+P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGTGDDSFNTFFSETGSGKHVPRAVYVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.426e-53
Identity = 99/244 (40.57%), Postives = 149/244 (61.07%), Query Frame = 1
Query:  112 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLE--RVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            EILH+  GQ G Q+G   WE+   EHG+   GR +      ++      ++ E S G++VPR++ +DL+P  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E++D+V+D +R+ A+NC  LQGF + H              + ++  EY  +  L F+V+P+P+VS  VVEPYNA LS H  +EN+D   ++DNEA+YDIC R L +  PS+  LN LI+  +S +T  LRF G
Sbjct:    4 EILHLHLGQAGTQLGNSAWELYLLEHGLGHDGRPDPSAKDVVDGGSYETFFTETSNGKYVPRSLFVDLDPSPIDEIRTGGYRQLFHPELLISGKEDAANNYARGHYTIGKEMVDNVIDRIRRVADNCHSLQGFLIFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPAPRVSTAVVEPYNAVLSTHSTIENSDCTFLVDNEAVYDICRRNLDIPRPSYDHLNRLIAQVVSSITSSLRFDG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.426e-53
Identity = 103/246 (41.87%), Postives = 150/246 (60.98%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL--QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G QIG   WE+ C EHGI  +G+   D  +  + +  N +++E   G+ VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E ID VLD VRK ++ C  LQGF + H              + ++  +Y  +  L FS++P+P+V+  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PS+ +LN LIS  +S +T  LRF G
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICKRNLDIERPSYTNLNRLISQVVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA1_PARLI (Tubulin alpha-1 chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.426e-53
Identity = 102/246 (41.46%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G Q+G   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G ELID VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+V+P+P++S  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBA1_YEAST1.422e-5342.11Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA_OXYGR1.857e-5341.87Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA1_PELFA1.857e-5341.46Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA1_HOMAM1.857e-5341.06Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]
TBA1_GOSHI1.857e-5341.87Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA_PLAFK2.426e-5341.87Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_LEPDS2.426e-5341.06Tubulin alpha chain OS=Lepidoglyphus destructor PE... [more]
TBA_GLOLA2.426e-5340.57Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBA_ENTDO2.426e-5341.87Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA1_PARLI2.426e-5341.46Tubulin alpha-1 chain OS=Paracentrotus lividus PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
back to top