CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.404e-53
Identity = 101/246 (41.06%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD VRK ++ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.057e-53
Identity = 102/246 (41.46%), Postives = 147/246 (59.76%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPR V +DLEP  +D VR+G Y  +F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF + +              + ++  +Y  +  L F  +PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  P++ +LN LI+  +S +T  LRF G
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.057e-53
Identity = 102/246 (41.46%), Postives = 147/246 (59.76%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPR V +DLEP  +D VR+G Y  +F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF + +              + ++  +Y  +  L F  +PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  P++ +LN LI+  +S +T  LRF G
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.057e-53
Identity = 101/246 (41.06%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.057e-53
Identity = 101/246 (41.06%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.057e-53
Identity = 101/246 (41.06%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 7.057e-53
Identity = 101/246 (41.06%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G QIG   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.057e-53
Identity = 102/246 (41.46%), Postives = 147/246 (59.76%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G Q G   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP   D VR+G Y Q++ P+  + G+  A NN+A+GHYT G E++D VLD +RK A+NC  LQGF V H              + ++  +Y  +  L+F++ P+P+V+  VVEPYN+ LS H L+E+ D    LDNEALYD+C R L +  P++ +LN L++  +S +T  LRF G
Sbjct:    1 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFLVFHATGGGTGSGLGSLLLERLSVDYGRKSKLSFAITPAPQVATAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCRRNLDIERPTYTNLNRLVAQVISSLTASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.217e-53
Identity = 99/246 (40.24%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E+ID VLD +RK A+ C  LQGF + H              + ++  +Y  +  L F+++P+P++S  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.204e-52
Identity = 104/249 (41.77%), Postives = 148/249 (59.44%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGD-----NDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G Q+G   WE+ C EHGI   G+   D     ND   +  N +++E   G+ VPR V +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E+ID  LD +RK A+NC  LQGF +                + ++  +Y  +  L F  +PSP+VS  VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC + L +  P++ +LN LI+  +S +T  LRF G
Sbjct:    1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPPDQAGRAND---DAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICKKNLDIERPTYTNLNRLIAQVISSLTASLRFDG 246          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBAT_ONCMY5.404e-5341.06Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA_TOXGO7.057e-5341.46Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_NEOCA7.057e-5341.46Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA3_RAT7.057e-5341.06Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE7.057e-5341.06Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3_BOVIN7.057e-5341.06Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ... [more]
TBA3C_HUMAN7.057e-5341.06Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
TBA2_PELFA7.057e-5341.46Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA2_PATVU9.217e-5340.24Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA_PLAYO1.204e-5241.77Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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