CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.803e-52
Identity = 101/250 (40.40%), Postives = 149/250 (59.60%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVN------VYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + +  GQ G QIG   WE+ C EHGI + G +      Q  ++N       +++E   G+ VPRAV++DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E ID VLD +RK  + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LIS  +S +T  LRF G
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFG----TQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.019e-51
Identity = 98/246 (39.84%), Postives = 147/246 (59.76%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + I  GQ G Q+G   WE+ C EHGI   G+   D  + +  +  N ++ E   G+ VPRAV +DLEP  +D VRSG Y Q+F P+  + G+  A NN+A+GHYT G E +D VLD +RK A+ C  LQGF +                + ++  EY  +  L  +++P+P+ + +VVEPYN+ L+ H  +E++D C ++DNEA++DIC R L ++ P++ +LN LI   +S +T  LRF G
Sbjct:    1 MRECISIHVGQAGVQMGNSCWELYCLEHGIQPDGQMPSDKTVGVCNDSFNTFFTETGSGKHVPRAVFVDLEPSVIDEVRSGIYRQLFHPEQLISGKEDAANNYARGHYTIGKEYVDIVLDRIRKLADQCTGLQGFLIFRSFGGGTGSGFASLLMERLSVEYGKKSKLEIAIYPAPQSATSVVEPYNSILTTHTTLEHSDCCFMVDNEAIFDICQRNLDVSRPTYTNLNRLIGQIVSSITASLRFEG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.331e-51
Identity = 100/247 (40.49%), Postives = 147/247 (59.51%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL---ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G QIG   WE+   EHGI   G      D      E  + +++E   G++VPRA+ +DLEP  +D VR+G Y  +F P+  + G+  A NN+A+GHYT G E++D +LD VR+ ++ CD LQGF   H              + ++  +Y  +  L F+V+P+P+VS +VVEPYN  L+ H  +E+AD   ++DNEA+YD+C R L +  P+F  LN+LI+  +S VT  LRF G
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSQEHGIRPDGYLQEGLDRPKGGEEGFSTFFSETGSGKYVPRALYVDLEPNVIDEVRTGVYKDLFHPEQLIAGKEDAANNYARGHYTVGREILDDILDRVRRMSDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSLDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCRRNLDIARPNFSSLNNLIAQVVSSVTASLRFDG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.331e-51
Identity = 101/247 (40.89%), Postives = 146/247 (59.11%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL---ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G QIG   WE+   EHGI   G             E  + +++E   G+FVPRA+ +DLEP  +D VR+G + ++F P+  + G+  A NN+A+GHYT G E++D V + +RK A+ CD LQGF   H              +  +  EY  +  L F+V+P+P++S +VVEPYN  L+ H  +E+AD   ++DNEA+YDIC R L ++ PSF +LN LI+  +S VT  LRF G
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKEDGHLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGHYTVGREIVDEVEERIRKMADQCDGLQGFLFTHSLGGGTGSGLGSLLLENLSYEYGKKSKLEFAVYPAPQLSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDICKRNLGISRPSFSNLNGLIAQVISSVTASLRFDG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.331e-51
Identity = 103/249 (41.37%), Postives = 147/249 (59.04%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG-----RYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MREI+ +  GQ G QI    WE+ C EHGI   G     R   D D      + +++E   G++VPR +  DLEP  +D VR+G Y  +F P++ + G+  A NN+A+GHYT G ELID VLD VR+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E+AD   ++DNEA+YDIC R L L  P++ +LN LI+  +S +T  LRF G
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPD---HGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.738e-51
Identity = 105/253 (41.50%), Postives = 154/253 (60.87%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGD-------NDLQLERVNVYYNEASCGR-FVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMM-LTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            REI+ I  GQ G Q+G   WE+ C EHGI+  G    D       N+L  + +  +++E++ G+  VPRA+ +DLEP  +D +R+G Y  +F P+  + G+  A NN+A+GHYT G ELID  +D +R+ A+ CD LQGF V H              + K+  +Y  +   L F V+PSP+VS +VVEPYN+ LS H L+E+ D   +LDNEA+Y+IC  +L +  P++ +LN LI+  +S +T  LRFPGQ
Sbjct:    3 REIISIHIGQAGVQVGNSCWELYCLEHGIERDGSIPADRKQSSDVNNLNKD-LGTFFSESTNGKKVVPRAIFLDLEPTVIDEIRTGDYKNLFHPEQLITGKEDAANNYARGHYTVGKELIDVCVDRIRRLADQCDGLQGFLVFHSVGGGTGSGFGSLLLQKLALDYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKNSLDIEKPTYTNLNRLIAQVISSLTSSLRFPGQ 254          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.738e-51
Identity = 99/246 (40.24%), Postives = 145/246 (58.94%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + +  GQ G Q+G   WE+ C EHGI   G+   D  +    +    ++ E   G+ VPRA+ +DLEP  +D VR+G Y Q+F P+  + G+    NN+A+GHYT G E+ID VLD +RK A+ C  LQGF   H              + ++  +Y  +  L FS++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LIS  +S +T  LRF G
Sbjct:    1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.270e-51
Identity = 100/246 (40.65%), Postives = 146/246 (59.35%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ I  GQ G QI    WE+ C EHGI   G    +   Q   +  + +++E   G+ VPRA+  DLEP  +D VR+G Y  +F P+  + G+  A NN+A+GHYT G ELID VLD +R+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L L  P++ +LN LI+  +S +T  LRF G
Sbjct:    1 MREVISINVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAQDPDQGFSTFFSETGNGKHVPRAIYCDLEPNVVDEVRTGAYRNLFHPEMMITGKEDASNNYARGHYTVGKELIDGVLDKIRRVADNCAGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.270e-51
Identity = 101/248 (40.73%), Postives = 149/248 (60.08%), Query Frame = 1
Query:  106 MREILHIQG-GQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL---ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ +   GQ G QIG   WE+   EHGI   G             E  + ++NE   G+FVPRAV +DLEP  +D VR+G Y ++F P+  + G+  A NN+A+GHYT G EL+D +LD +RK ++ CD LQGF   H              + ++  +Y  +  L F+V+P+P+VS +VVEPYN  L+ H  +E+AD   ++DNEA+Y++C + L ++ PSF +LN+LI+  +S VT  LRF G
Sbjct:    1 MREVISVNAVGQAGCQIGNACWELYSLEHGIRPDGYLQEGLTKPKGGEEGFSTFFNETGSGKFVPRAVYVDLEPNVIDEVRTGAYRELFHPEQLISGKEDAANNYARGHYTVGRELLDDILDRIRKISDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSIDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYEMCKKNLDISRPSFANLNNLIAQVVSSVTASLRFDG 248          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_USTVI (Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.872e-51
Identity = 99/245 (40.41%), Postives = 145/245 (59.18%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REIL +  GQ GNQIG++FW  +CAEHGI   G          +R +V++ +A    ++PRAV++DLEP  +DS++SGPY  ++ P+NF +   G  AGNNWAKG Y  G  + + V++++ +EAE  D L+GF + H              + ++ + YP +++ T+SVFP     D VV+PYN+ LS+ +L  +AD  +VLDN AL  IC   L +   SF   N L+S  MS  T  LR+PG
Sbjct:    3 REILTVSAGQAGNQIGSEFWSQLCAEHGISKEGVLEDWATDMTDRKDVFFYQADDEHYIPRAVMIDLEPRVLDSIKSGPYKNLYNPENFFYDPQGGGAGNNWAKG-YAAGERVYEEVMEMIDREAEGSDSLEGFMLLHSIAGGTGSGLGSYLLERMNDRYPKKLIQTYSVFPDADSGDVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSASTQTLRYPG 246          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBA8_MOUSE7.803e-5240.40Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA2_HOMAM1.019e-5139.84Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA_CANAL1.331e-5140.49Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA3_YEAST1.331e-5140.89Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA2_NEUCR1.331e-5141.37Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA_DICDI1.738e-5141.50Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBA5_CHICK1.738e-5140.24Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA_GIBZE2.270e-5140.65Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_ASHGO2.270e-5140.73Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBG_USTVI3.872e-5140.41Tubulin gamma chain OS=Ustilago violacea GN=TUB4 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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