CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.058e-51
Identity = 93/244 (38.11%), Postives = 151/244 (61.89%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MREI+ +  GQ G QIG   WE+ C EHGI   G+ +  N +  E    +++  S G +VPR +++DLEPG +DS+++G Y +++ P   + G+  A NN+A+GHYT G E+I+  ++ +R+ A++CD LQGF + H              + ++  E+  +  L FSV+P+PK++  VVEPYN+ L+ H  ++ +D   ++DNEA+YD+C R L +  P + D+N +I+  +S +T  LRFPG
Sbjct:    1 MREIISLHIGQAGVQIGNACWELYCKEHGILPNGQLD-QNKMDDESAESFFSPTSVGTYVPRTLMVDLEPGVLDSIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPAMEQIRRMADSCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLVDNEAIYDMC-RNLGIQRPYYTDINRVIAQVVSSITASLRFPG 242          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.605e-51
Identity = 100/249 (40.16%), Postives = 148/249 (59.44%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG-----RYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ +  GQ G QI    WE+ C EHGI   G     R   ++D   +  + +++E   G++VPR +  DLEP  +D VR+G Y  +F P+  + G+  A NN+A+GHYT G ELID VLD VR  A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+V+ +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LI+  +S +T  LRF G
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAAEDD---DGFSTFFSETGNGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPELMITGKEDASNNYARGHYTVGKELIDQVLDKVRHVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKCKLEFCVYPAPQVATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPNYENLNRLIAQVVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.605e-51
Identity = 98/246 (39.84%), Postives = 145/246 (58.94%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL--QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + +  GQ G QIG   WE+ C EHGI + G +          +    +++E   G+ VPRAV++DLEP  +D VR+G Y  +F P+  + G+  A NN+A+GHYT G E ID VLD +RK  + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LIS  +S +T  LRF G
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKIHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRHLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 6.605e-51
Identity = 100/249 (40.16%), Postives = 147/249 (59.04%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG-----RYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ +  GQ G QI    WE+ C EHGI   G     R   D D      + +++E   G++VPR +  DLEP  +D VR+G Y  +F P+N + G+  A NN+A+GHYT G E+ID VLD VR+ A++C  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PS+ +LN LI+  +S +T  LRF G
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKKEDPD---HGFSTFFSETGQGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPENLITGKEDASNNYARGHYTVGKEMIDQVLDKVRRMADSCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPSYENLNRLIAQVVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.627e-51
Identity = 95/244 (38.93%), Postives = 145/244 (59.43%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE + +  GQ G QIG   WE+ C EH I   G ++ D     +    ++ E S  ++VPRA+++DLEP  +D VR+G Y  +F P+  + G+  A NN+A+GHYT G + +D V D +RK A++C  LQGF + H              + ++  EY  +  L F+++P+P+ S  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P++ +LN LIS  +S +T  LRF G
Sbjct:    1 MRECISVHIGQAGVQIGNACWELFCLEHSIQPDGTFS-DPPSSDDSFATFFRETSMSKYVPRAIMVDLEPTVVDEVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKDKVDMVSDRIRKLADSCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVEYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHTTLEHSDCVFMVDNEAIYDICHRNLDIERPTYTNLNRLISQIVSSITASLRFDG 243          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.472e-50
Identity = 98/237 (41.35%), Postives = 141/237 (59.49%), Query Frame = 1
Query:  133 GQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            GQ G Q+G   WE+ C EHGI   G+   D       +  N +++E   G+ VPRA+ +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E+ID VLD  RK A+ C  LQGF + H              + ++  +Y  +  L F+V+P+P+VS  VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PS+ +LN LI   +S +T  LRF G
Sbjct:    4 GQAGVQMGNACWELYCLEHGIQPDGQMPSDKTCGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGIYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDIVLDRTRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDG 240          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.510e-50
Identity = 96/245 (39.18%), Postives = 145/245 (59.18%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ IQ GQCGN +G++FW+ +C EHGI   G          +R +V++ ++   R++PRA+L+DLEP  ++ ++SGPY  I+ P+NF  GQ G  AGNNW  G Y  G  + + V D++ +EA+  D L+GF   H              + ++ + +P +++ T+SVFP  + +D VV PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF   N L+S  MS  T  LR+PG
Sbjct:    3 REIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGGDRKDVFFYQSDDTRYIPRAILLDLEPRVLNGIQSGPYKNIYNPENFFIGQQGIGAGNNWGAG-YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSIAGGTGSGLGSFLLERMNDRFPKKLIQTYSVFPDTQAADVVVNPYNSLLAMRRLTQNADSVVVLDNAALSRIVADRLHVQEPSFQQTNRLVSTVMSASTTTLRYPG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG2_BOVIN (Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.303e-50
Identity = 96/246 (39.02%), Postives = 152/246 (61.79%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +CAEHGI   G          +R +V++ +A    ++PRAVL+DLEP  + S+ + PY +++ P+N    +   GAGNNWA G +++G ++ + + D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_HUMAN (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 7.303e-50
Identity = 96/246 (39.02%), Postives = 152/246 (61.79%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +CAEHGI   G          +R +V++ +A    ++PRAVL+DLEP  + S+ + PY +++ P+N    +   GAGNNWA G +++G ++ + + D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_BOVIN (Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.303e-50
Identity = 96/246 (39.02%), Postives = 152/246 (61.79%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +CAEHGI   G          +R +V++ +A    ++PRAVL+DLEP  + S+ + PY +++ P+N    +   GAGNNWA G +++G ++ + + D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPG 247          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBA_ENCCU5.058e-5138.11Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA_MYCGR6.605e-5140.16Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA8_BOVIN6.605e-5139.84Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA1_EMENI6.605e-5140.16Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA2_CHICK8.627e-5138.93Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_ONCKE1.472e-5041.35Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBG_EMENI2.510e-5039.18Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG2_BOVIN7.303e-5039.02Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 ... [more]
TBG1_HUMAN7.303e-5039.02Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=... [more]
TBG1_BOVIN7.303e-5039.02Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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