CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.538e-50
Identity = 96/246 (39.02%), Postives = 151/246 (61.38%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP-SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +CAEHGI   G          +R +V++ +A    ++PRAVL+DLEP  + S+ + PY +++ P+N    +   GAGNNWA G +++G ++ + + D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP   ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.246e-49
Identity = 101/249 (40.56%), Postives = 145/249 (58.23%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG-----RYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MREI+ +  GQ G QI    WE+ C EHGI   G     R   D D      + +++E   G++VPR +  DLEP  +D VR+G Y  +F P++ + G+  A NN+A+GHYT G ELID VLD VR+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPY+  L+ +  +E AD   ++DNEA+YDIC R L L  P++ +LN LI+  +S +T  LRF G
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPD---HGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYHNFLTTNTTLEQADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITASLRFDG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.775e-49
Identity = 95/246 (38.62%), Postives = 151/246 (61.38%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +CAEHGI   G          +R +V++ +A    ++PRAVL+DLEP  + S+ + PY +++ P+N    +   GAGNNWA G +++G ++ + + D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN  L  I    L +  PSF  +N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.624e-49
Identity = 97/113 (85.84%), Postives = 97/113 (85.84%), Query Frame = 1
Query:  502 FQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQ 840
            FQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENAD CMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC LRFPGQ
Sbjct:    1 FQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADVCMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCSLRFPGQ 113          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.182e-49
Identity = 95/246 (38.62%), Postives = 150/246 (60.98%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +CAEHGI   G          +R +V++ +A    ++PRAVL+DLEP  + S+ + PY  ++ P+N    +   GAGNNWA G +++G ++ + + D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++S  VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYANLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSHVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.075e-49
Identity = 100/248 (40.32%), Postives = 152/248 (61.29%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG---RYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+  Q GQCGNQIG +FW+ +C EHGI   G    Y  D +   +R +V++ +A    +VPRAVL+DLEPG +  +++ PY  ++ P+NF   ++  GAGNNWAKG Y EGA+  + +++++ +EA+  D L+GF + H              + K+ + YP +++ T+SVFP+   +D VV+PYN  LS+ +LV NAD  +VLDN A+  I    LKL  P+   +N ++S  M+  T  LR+PG
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGISPEGILEEYALDGE---DRKDVFFYQADDEHYVPRAVLIDLEPGVIKQIQNSPYSNLYNPENFFVSKTMDGAGNNWAKG-YCEGAKYEEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLEKLNDHYPKKLVQTYSVFPND--NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAASTTTLRYPG 244          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.055e-48
Identity = 93/246 (37.80%), Postives = 150/246 (60.98%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP-SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ IQ GQCGN IG++FW+ +C EHGI   G          +R +V++ ++   R++PR++L+DLEP  ++++++GPY  I+ P+NF  G+SG  AGNNW  G+ T G ++ + +++++ +EA+  D L+GF + H              + ++ + +P +++ T+SVFP +    D VV PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF   N L+S  MS  T  LR+PG
Sbjct:    3 REIITIQAGQCGNSIGSQFWQQLCLEHGISQDGTIEDFATEGGDRKDVFFYQSDDTRYIPRSILIDLEPRVINTIQTGPYRNIYNPENFYVGKSGLGAGNNWGDGYQT-GEQVHEEIMEMIEREADGSDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDTTSAGDVVVHPYNSLLAMRRLTQNADSVVVLDNGALSHIAADRLHVQEPSFQQTNQLVSTVMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.055e-48
Identity = 94/246 (38.21%), Postives = 151/246 (61.38%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +CAEHGI   G          +R +V++ +A    ++PRAVL+DLEP  + S+ +  Y +++ P+N    +   GAGNNW +G +++G ++ + + D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.055e-48
Identity = 95/246 (38.62%), Postives = 151/246 (61.38%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +CAEHGI   G          +R +V++ +A    ++PRAVL+DLEP  + S+ +  Y +++ P+N    +   GAGNNWA G +++G ++ + + D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.055e-48
Identity = 95/246 (38.62%), Postives = 151/246 (61.38%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +CAEHGI   G          +R +V++ +A    ++PRAVL+DLEP  + S+ +  Y +++ P+N    +   GAGNNWA G +++G ++ + + D++ +EA+  D L+GF +CH              + ++ + YP +++ T+SVFP+  ++SD VV+PYN+ L++ +L +NAD  +VLDN AL  I    L +  PSF  +N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPG 247          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBG2_HUMAN9.538e-5039.02Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=... [more]
TBA_SORMA1.246e-4940.56Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBG1_CANFA2.775e-4938.62Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBB1_DAUCA3.624e-4985.84Tubulin beta-1 chain (Fragment) OS=Daucus carota G... [more]
TBG1_XENLA6.182e-4938.62Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 P... [more]
TBG2_EUPCR8.075e-4940.32Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG_NEUCR1.055e-4837.80Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG2_MOUSE1.055e-4838.21Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=... [more]
TBG1_RAT1.055e-4838.62Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg... [more]
TBG1_MOUSE1.055e-4838.62Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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