CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.377e-48
Identity = 94/246 (38.21%), Postives = 149/246 (60.57%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFP-SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG++FW+ +C EHGI   G         ++R +V++ ++   R++PRA+L+DLEP  ++++ S  YG ++ P+N +  ++  GAGNNWA G Y+    + + ++D++ +EA+  D L+GF + H              + ++ + YP +++ T+SVFP S  VSD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L    P+F   N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.799e-48
Identity = 100/253 (39.53%), Postives = 145/253 (57.31%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG-----RYNGDNDLQLERVNV----YYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE L I  GQ G QIG   WE+ C EHGI   G     +++   + ++E +N     +++E   G+ VPR + MDLEP  +D +R G Y  +F P+  V G+  A N +A+G Y+ G+E+I+ VL+ +RK AE C  LQGF +                + ++  EY  ++ L FSV+PSP++S  VVEPYNA L+ H  +E +D   ++DNEALYDIC   L +  PS+  +N LI+   S +T  LRF G
Sbjct:    1 MRECLSIHIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFFHETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSEVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSPRISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIGRPSYASINRLIAQVSSSITASLRFEG 253          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.349e-48
Identity = 95/245 (38.78%), Postives = 142/245 (57.96%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG-----RYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 825
            MRE++ +  GQ G QI    WE+ C EHGI   G     R   D D   +  N +++E   G++VPR +  DLEP  +D VR+GPY  +F P+  + G+  A NN+A+GHYT G E+ID  LD VR+ A+NC  LQGF V H              + ++  +Y  +  L F V+P+P+ + +VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  PS+ + N L++   S +T  +
Sbjct:    1 MREVVSLNVGQAGGQIANSCWELYCLEHGIQPDGYLTEERKAADPD---QGFNTFFSETGQGKYVPRTIYCDLEPNVVDEVRTGPYRALFHPEQMITGKEDASNNYARGHYTVGKEMIDQCLDKVRRVADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNLGIERPSYENSNRLMAQGQSPITAIM 242          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 93/246 (37.80%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQ+G++FW+ +C EHGI   G         L+R +V++ ++   R++PRA+L+DLEP  ++++ S  YG ++ P+N        GAGNNWA G Y    ++ + ++D++ +EAE  D L+GF + H              + ++ + +P +++ T+SVFP+ + VSD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L +  P+F   N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQAGQCGNQVGSQFWQQLCLEHGICPDGTLEDFATEGLDRKDVFFYQSDDTRYIPRAILLDLEPRVVNNILSDTYGSLYNPENIFVATDGGGAGNNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSIAGGTGSGLGSYLLERLNDRFPKKIVQTYSVFPNNRSVSDVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 92/245 (37.55%), Postives = 151/245 (61.63%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSG--AGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQ+GA +W+ +CAEHGI S G          +R +V++ +A    ++PRA+L+DLEP  ++++ + PY  ++ P+N    + G  AGNNWA+G Y+ G  + + +++++ +EAE  D L+GF V H              + ++ +++P +++ T+SVFP+ +  D VV+PYN+ L++ +LV +AD  +VLDN AL  I    L + TPSF   N L+S  ++  T  LR+PG
Sbjct:    3 REIVTVQLGQCGNQMGAVYWQRLCAEHGISSEGILEEWATEGGDRKDVFFYQADDEHYIPRAILVDLEPRVINNILASPYANLYNPENIFVSKDGGGAGNNWAQG-YSAGERIYEDIMEMIDREAEGSDSLEGFMVMHSIAGGTGSGLGSFLLERLNDKFPKKLIQTYSVFPNAQEGDVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAASTQTLRYPG 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.166e-47
Identity = 95/244 (38.93%), Postives = 150/244 (61.48%), Query Frame = 1
Query:  112 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 834
            EI+ +Q GQCGNQIG +FW+ +C EHGI  +G      +  L+R +V++ +A    ++PRAVL+DLEP  ++++    Y +++ P+N    +   GAGNNWA G Y++G +L + V D++ +EA+  D L+GF +CH              + ++ + YP +++ TFSVFP+  ++SD VV+PYN+ L++ +L   AD  +VLDN AL  I    L +  PSF  +N+L+S  MS  T  LR+P
Sbjct:    4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDGLDRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVSTTTLRYP 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.523e-47
Identity = 99/253 (39.13%), Postives = 139/253 (54.94%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEAS---------CGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE L I  GQ G QIG   WE+ C EHGI   G        QLE   + +  AS          G+ VPRA+ +DLEP  +D +R+G +  +F P+  + G+  A NN+A+G Y+ G+E+ID VL+  RK AE C  LQGF +                + ++  EY  +  L FSV+P+P++S  VVEPYN+ L+ H   E+ D   ++DNEA+YDIC R L +  PS   +N L+   +S +T  LRF G
Sbjct:    1 MRECLSIHIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAKMEHTNASFDTFFCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGSEVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVYPAPRISTAVVEPYNSVLTTHSTTEHTDCTFMVDNEAVYDICHRKLGVECPSHASINRLVVQVVSSITASLRFEG 253          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 95/246 (38.62%), Postives = 149/246 (60.57%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPS-PKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+++Q GQCGNQ+G++FW  +C EHGI   GR      L  +R +V++ +A   +++PRA+L+DLEP  ++ +++     +F P+N    +   GAGNNWA G YT+G  + +++LD++ +EAE CD L+GF +CH              +  I + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  +AD  +VLDN AL  I    L L  P    +N LI+  M+  T  LR+PG
Sbjct:    3 REIINLQVGQCGNQVGSEFWRKLCQEHGIAKDGRLEDFATLGGDRKDVFFYQADDEQYIPRAILLDLEPRVINGIQTSDLRNLFNPENIFISKEGGGAGNNWASG-YTQGEAVQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQSESSDVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERLHLHKPDVQQINSLIATVMAASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.989e-47
Identity = 96/257 (37.35%), Postives = 144/257 (56.03%), Query Frame = 1
Query:  106 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDL-------------QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            MRE++ IQ GQCG QIG   WE+   EHGI+  G      +L                    ++ E   G+ VPR++ +DLEP  +D VR+G   +++ P+  + G+  A NN+A+G Y+ G E+ID V   ++K AE CD LQGF + H              + ++  +Y  +  L F+V+PSPKVS  VVEPYNA L+ H  ++++D   ++DNEA+YDIC  +L +  P++ +LN LI+  +S  T  LRF G
Sbjct:    1 MREVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFTETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEPYNALLTTHSTMDHSDCVFMVDNEAIYDICNNSLGVDRPAYRNLNRLIAQIVSSTTASLRFSG 257          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.684e-46
Identity = 94/246 (38.21%), Postives = 146/246 (59.35%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ IQ GQCGNQIG +FW+ +C EHGI   G          +R +V++ +A    F+PR++L+DLEP  ++ +++  Y  ++  +N    +   GAGNNWA G Y +G +++D ++D+V +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L+ P+F   N L+S  MS  T  LR+PG
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGGDRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPG 247          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBG_SCHPO1.377e-4838.21Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBAL3_MOUSE1.799e-4839.53Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA_AJECA2.349e-4838.78Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBG_SCHJP8.927e-4837.80Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG_COPC78.927e-4837.55Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBG1_DROME1.166e-4738.93Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBAL3_HUMAN1.523e-4739.13Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBG_CHLRE1.989e-4738.62Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBA4_DROME1.989e-4737.35Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBG2_MAIZE1.684e-4638.21Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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