CK935337

Overview
NameCK935337
Unique NameCK935337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.199e-46
Identity = 94/246 (38.21%), Postives = 145/246 (58.94%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ IQ GQCGNQIG +FW+ +C EHGI   G          +R +V++ +A    F+PR++L+DLEP  ++ +++  Y  ++  +N    +   GAGNNWA G Y +G + +D ++D+V +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L+ P+F   N L+S  MS  T  LR+PG
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGGDRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.872e-46
Identity = 93/246 (37.80%), Postives = 145/246 (58.94%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ IQ GQCGNQIG +FW+ +C EHGI   G          +R +V++ +A    ++PRA+L+DLEP  ++ +++  Y  ++  +N    +   GAGNNWA G Y +G +++D ++D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L L  P+F   N L+S  MS  T  LR+PG
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGLLEDFATQGGDRKDVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASG-YHQGEQVVDDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTFAQTNSLVSTVMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.899e-46
Identity = 89/245 (36.33%), Postives = 147/245 (60.00%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG++FW+ +C EHGI++ G         ++R +V++ ++    +VPRA+L+DLEP  +DS+++  Y  ++  +N    +  +GAGNNWA G Y +G    D + D++ +EA+  + L+GF + H              + ++ + +P +++ T+SVFP    S  VV+ YN+ L++ +L+ENAD  +VLDN AL+ I    L++  P+    N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQVGQCGNQIGSEFWKQLCKEHGINAAGYLEEFAKPGIDRKDVFFYQSDDDHYVPRALLLDLEPRVIDSIKTSEYSGLYNQENIFVAEKGTGAGNNWANG-YKQGESFYDDIFDMIDREADGSESLEGFLLTHSISGGTGSGMGSYILERLNDRFPKKIIQTYSVFPDD--SSVVVQQYNSVLTLKRLIENADSTVVLDNNALHRIVGENLRIDQPTMDQTNSLVSTVMSASTTTLRYPG 244          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.398e-46
Identity = 95/250 (38.00%), Postives = 147/250 (58.80%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG-----RYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+  Q GQCGNQIG +FW+ +C EHGI+  G       NG+     +R +V++ +A    +VPRAVL+DLEP  ++ ++   Y  ++ P+N    +   GAGNNW +G YT+  ++ D +L+++ +EA+  D L+GF + H              + +I + YP +++ T+SVFP    +D VV+PYN  LS+ +L  NAD  +VLDN AL  I    LK+  P+F  +N ++S  M+  T  LR+PG
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNGE-----DRKDVFFYQADDEHYVPRAVLIDLEPRVINCIQKSTYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERINDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPG 244          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.356e-46
Identity = 94/250 (37.60%), Postives = 147/250 (58.80%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG-----RYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+  Q GQCGNQIG +FW+ +C EHGI+  G       NG+     +R +V++ +A    +VPRAVL+DLEP  ++ ++   Y  ++ P+N    +   GAGNNW +G YT+  ++ D +L+++ +EA+  D L+GF + H              + ++ + YP +++ T+SVFP    +D VV+PYN  LS+ +L  NAD  +VLDN AL  I    LK+  P+F  +N ++S  M+  T  LR+PG
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNGE-----DRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPG 244          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 8.356e-46
Identity = 94/250 (37.60%), Postives = 147/250 (58.80%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTG-----RYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+  Q GQCGNQIG +FW+ +C EHGI+  G       NG+     +R +V++ +A    +VPRAVL+DLEP  ++ ++   Y  ++ P+N    +   GAGNNW +G YT+  ++ D +L+++ +EA+  D L+GF + H              + ++ + YP +++ T+SVFP    +D VV+PYN  LS+ +L  NAD  +VLDN AL  I    LK+  P+F  +N ++S  M+  T  LR+PG
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNGE-----DRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVSTVMAASTTTLRYPG 244          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.356e-46
Identity = 91/245 (37.14%), Postives = 146/245 (59.59%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+  Q GQCGNQIG +FW+ +C EHGI+  G          +R +V++ +A    +VPRAVL+DLEP  ++ ++  PY  ++ P+N    +   GAGNNW +G Y +  ++ + +++++ +EA+  D L+GF + H              + ++ + YP +++ T+SVFP+   +D VV+PYN  LS+ +L+ NAD  +VLDN AL  I    LKL  P+F  +N ++S  M+  T  LR+PG
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEEYAQNGEDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSPYASLYNPENIFISKHGGGAGNNWGRG-YCDAEKVQEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPNE--NDVVVQPYNCLLSMKRLILNADCVVVLDNTALTSIAVDRLKLLQPTFPQINSIVSTVMAASTTTLRYPG 244          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 1.091e-45
Identity = 91/244 (37.30%), Postives = 150/244 (61.48%), Query Frame = 1
Query:  112 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 834
            EI+ +Q GQCGNQIG +FW+ +C EHGI   G          +R +V++ +A    ++PRAVL+DLEP  ++++ + PY +++  +N    +   GAGNNWA G +++G ++ + V D++ +EA+  D L+GF +CH              + ++ E +P +++ T+SVFP+  ++SD VV+PYN+ L++ +L + AD  +VLDN AL  I    L + TP+F  +N+L+S  MS  T  LR+P
Sbjct:    4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDGQDRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG-FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYP 246          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.425e-45
Identity = 93/246 (37.80%), Postives = 144/246 (58.54%), Query Frame = 1
Query:  109 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            REI+ +Q GQCGNQIG +FW+ +C EHGI   G          +R +V++ +A    ++PRA+L+DLEP  ++ +++G Y  ++  +N        GAGNNWA G Y +G  + + ++D++ +EA+  D L+GF +CH              +  + + Y  +++ T+SVFP+  + SD VV+PYN+ L++ +L  NAD  +VLDN AL  I    L LT P+F   N L+S  MS  T  LR+PG
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPG 247          
BLAST of CK935337 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.425e-45
Identity = 83/220 (37.73%), Postives = 138/220 (62.73%), Query Frame = 1
Query:  178 CAEHGIDSTGRYNGDNDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 837
            C EHGI   GR +  N +  E    ++++ S G +VPR +++DLEPG ++S+++G Y +++ P   + G+  A NN+A+GHYT G E+I+ V++ +R+ A+NCD LQGF + H              + ++  E+  +  L FSV+P+PK++  VVEPYN+ L+ H  ++ +D   ++DNEA+YD+C R L +  P + D+N +I+  +S +T  LRFPG
Sbjct:    3 CKEHGILPDGRLD-QNRMDDESAESFFSQTSVGTYVPRTLMVDLEPGVLESIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPVMEQIRRMADNCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLVDNEAIYDMC-RNLGIQRPYYTDINRIIAQVVSSITASLRFPG 220          
The following BLAST results are available for this feature:
BLAST of CK935337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBG1_MAIZE2.199e-4638.21Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBG2_ORYSJ2.872e-4637.80Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG_DICDI4.899e-4636.33Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBG_EUPAE6.398e-4638.00Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBG2_EUPOC8.356e-4637.60Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG1_EUPOC8.356e-4637.60Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBG1_EUPCR8.356e-4637.14Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG2_DROME1.091e-4537.30Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG2_ARATH1.425e-4537.80Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]
TBA_ENCHE1.425e-4537.73Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_H06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935337 ID=CK935337; Name=CK935337; organism=Citrus sinensis; type=EST; length=841bp
GGGGGCAGAAGTCATCTCTCTTCTATTGCTTACTTCACTCTCAAACAAAA
AAACAAACAAACCAAATTGCAAAACTCTCGACTTCGCTCTCACTCGCTCG
ACAAGATGCGTGAGATTCTTCACATTCAAGGAGGCCAATGCGGCAACCAG
ATCGGAGCCAAGTTCTGGGAGGTGGTGTGCGCCGAGCACGGCATCGACTC
AACGGGGAGGTACAACGGCGACAACGACCTGCAGTTGGAGAGAGTGAATG
TTTACTACAACGAAGCGAGCTGCGGGCGGTTTGTGCCACGCGCCGTCCTC
ATGGATCTGGAGCCAGGGACCATGGACAGCGTCAGATCCGGGCCGTACGG
GCAGATTTTCAGGCCCGACAACTTCGTTTTCGGGCAGTCCGGGGCCGGAA
ATAACTGGGCCAAAGGTCACTACACTGAAGGCGCTGAGTTGATTGACTCC
GTGCTTGATGTTGTTCGCAAGGAAGCTGAGAACTGTGACTGCTTGCAAGG
ATTTCAAGTGTGTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAA
CACTTCTCATTTCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTC
ACTTTCTCAGTGTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACC
ATACAATGCAACACTCTCCGTTCACCAGCTGGTTGAAAATGCTGATGAAT
GTATGGTTTTGGATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTC
AAGCTCACCACTCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCAC
CATGAGTGGTGTGACCTGTTGCCTTCGTTTTCCGGGTCAGC
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